BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0904.p (553 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310432|ref|YP_003774524.1| glucose-6-phosphate isomerase [... 983 0.0 gi|300311812|ref|YP_003775904.1| glucose-6-phosphate isomerase [... 556 e-159 >gi|300310432|ref|YP_003774524.1| glucose-6-phosphate isomerase [Herbaspirillum seropedicae SmR1] Length = 554 Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/553 (85%), Positives = 508/553 (91%), Gaps = 2/553 (0%) Query: 1 MHTTALTDTAAYQALQAHHATAVQWHLRDLFAQQPDRFERMHVRAAGLLLDYSKNRLNAD 60 MHTTALTDTAA++ALQ HHA AV WH+R+LFAQQPDRFERMHVRAAGLLLDYSKNR+ ++ Sbjct: 1 MHTTALTDTAAFKALQHHHAKAVTWHMRELFAQQPDRFERMHVRAAGLLLDYSKNRIESE 60 Query: 61 TLALLMNLARERGVEALREAMFSGEKINFTEHRAVLHTALRAPLDACDTQVDGQAVAPEV 120 TLALLM+LARERGVEALREAMF GEKINFTEHRAVLHTALRAP ACD QVDGQ V+ EV Sbjct: 61 TLALLMSLARERGVEALREAMFRGEKINFTEHRAVLHTALRAPAQACDAQVDGQPVSQEV 120 Query: 121 HRVLQHMRSFSEQVRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALRDYQHARLTAH 180 H VL H+R FSE+VRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALR+Y+HARLT H Sbjct: 121 HAVLDHIRDFSERVRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALRNYRHARLTTH 180 Query: 181 FVSNVDGHDLDEVLSRIDPETTLFIVASKTFTTQETMLNAKSARAWFLQYGKQQDLARHF 240 FVSNVDGHDLDEVLSR+DPETTLFIVASKTFTTQETMLNAKSARAWFL++G+Q DLARHF Sbjct: 181 FVSNVDGHDLDEVLSRVDPETTLFIVASKTFTTQETMLNAKSARAWFLRHGQQADLARHF 240 Query: 241 VAVSTNAAEVAAFGIDTANMFPFWDWVGGRYSVWSAIGLPVALLIGYEHFAQFLAGAHDM 300 VAVSTNAAEV +FGID NMFPFWDWVGGRYSVWSAIGLP+ALLIG+EHF+ FLAGAH M Sbjct: 241 VAVSTNAAEVESFGIDPDNMFPFWDWVGGRYSVWSAIGLPIALLIGFEHFSAFLAGAHAM 300 Query: 301 DRHFCEAPLETNMPVIQALVGIWNRNFLDSASLTIAPYHQWLRFFPAYLQQLDMESNGKR 360 DRHF +APLE NMPVIQAL+GIWNRNF +S SL++APYHQWLR+FPAYLQQLDMESNGKR Sbjct: 301 DRHFRDAPLEANMPVIQALIGIWNRNFFNSESLSVAPYHQWLRYFPAYLQQLDMESNGKR 360 Query: 361 ITRDGTPVSVQTCPAIWGDVGTNGQHAYFQLLHQGTDITPIDFIAVLKPSHNIAEHQATL 420 ITRDGTPV V TCP IWGDVGTNGQHA+FQLLHQGT++TPIDFIAVLKPSH I EHQ L Sbjct: 361 ITRDGTPVGVATCPFIWGDVGTNGQHAFFQLLHQGTNVTPIDFIAVLKPSHGIDEHQDVL 420 Query: 421 LANCFAQSEAFMRGKDAAEVRADLQAQGVPEAELAALVPHKTFTGNRPSNTLLLPELSPH 480 LANCFAQSEAFMRGK A EVRADL+ QGV AELAAL+PHKTF GNRPSNTLLLPELSPH Sbjct: 421 LANCFAQSEAFMRGKQADEVRADLERQGVDAAELAALLPHKTFDGNRPSNTLLLPELSPH 480 Query: 481 ALGAMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTILAELKSDAAPDAARHDASTS 540 ALGAMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTI EL+S+ P+ A HDAST+ Sbjct: 481 ALGAMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTIHGELRSE--PNPALHDASTN 538 Query: 541 ALIALARQALQEN 553 ALIALARQA Q + Sbjct: 539 ALIALARQARQAD 551 >gi|300311812|ref|YP_003775904.1| glucose-6-phosphate isomerase [Herbaspirillum seropedicae SmR1] Length = 570 Score = 556 bits (1432), Expect = e-159, Method: Compositional matrix adjust. Identities = 288/545 (52%), Positives = 360/545 (66%), Gaps = 13/545 (2%) Query: 5 ALTDTAAYQALQAHHA-TAVQWHLRDLFAQQPDRFERMHVRAAGLLLDYSKNRLNADTLA 63 +LT +A+++LQ H+ A + L LFA R E + A G+ LDYSKN + ++T+A Sbjct: 21 SLTGKSAWRSLQEHYRDRARHFQLARLFAADDKRGESLTAEAVGIYLDYSKNLVTSETMA 80 Query: 64 LLMNLARERGVEALREAMFSGEKINFTEHRAVLHTALRAPLDACDTQVDGQAVAPEVHRV 123 LLM LAR+ G+ EAMF G++IN TE+R+VLHTALR P VDGQ V EV +V Sbjct: 81 LLMQLARQCGLPDRIEAMFRGDRINLTENRSVLHTALRKPASE-RLVVDGQDVVAEVQQV 139 Query: 124 LQHMRSFSEQVRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALRDYQHARLTAHFVS 183 L+ M F+ QVRSG W G+TG I +VNIGIGGS LGP M ALR Y H LT HFVS Sbjct: 140 LRRMEGFARQVRSGQWLGHTGLPIRHVVNIGIGGSDLGPMMAYEALRPYSHDDLTLHFVS 199 Query: 184 NVDGHDLDEVLSRIDPETTLFIVASKTFTTQETMLNAKSARAWFLQ-YGKQQDLARHFVA 242 +VDG + + + + E TLFIV SKTFTT ET+ NA +ARAW +Q G ++ +ARHFV Sbjct: 200 DVDGAAMLDTVRGLPAEQTLFIVCSKTFTTLETITNATAARAWLVQQLGAEEAVARHFVG 259 Query: 243 VSTNAAEVAAFGIDTANMFPFWDWVGGRYSVWSAIGLPVALLIGYEHFAQFLAGAHDMDR 302 V+TN E FGID NMF FWDWVGGRYS+ SAIGL + IG EHF L G H MD Sbjct: 260 VTTNIEEAQRFGIDADNMFGFWDWVGGRYSMTSAIGLSTMVAIGPEHFRAMLEGFHAMDE 319 Query: 303 HFCEAPLETNMPVIQALVGIWNRNFLDSASLTIAPYHQWLRFFPAYLQQLDMESNGKRIT 362 HF APLE+N+PVI ++ +W NF +AS + PY Q L+ PAYLQQL MESNGK IT Sbjct: 320 HFRSAPLESNLPVILGMLTVWYTNFFGAASQAVLPYSQHLKRLPAYLQQLTMESNGKHIT 379 Query: 363 RDGTPVSVQTCPAIWGDVGTNGQHAYFQLLHQGTDITPIDFIAVLKPSHNIAEHQATLLA 422 +G PV QT P WGD G NGQH+++Q+LHQGT + P DFI + +P + + L+A Sbjct: 380 VNGEPVDYQTSPVYWGDNGINGQHSFYQMLHQGTQLVPCDFIGLCQPQQALGQQHELLMA 439 Query: 423 NCFAQSEAFMRGKDAAEVRADLQAQGVPEAELAALVPHKTFTGNRPSNTLLLPELSPHAL 482 N FAQSEA GKDA +VR + G PE ALVPH+ F GNRPSN++LL +L+P++L Sbjct: 440 NMFAQSEALAFGKDADQVRQE----GTPE----ALVPHRVFEGNRPSNSMLLQQLTPYSL 491 Query: 483 GAMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTILAELKSDAAPDAARHDASTSAL 542 G ++ALYEH F QG +W I+SFDQWGVELGK LAK EL P HD+ST+AL Sbjct: 492 GTLVALYEHSVFTQGVVWNIDSFDQWGVELGKQLAKRTARELIDHQQP--LHHDSSTNAL 549 Query: 543 IALAR 547 I R Sbjct: 550 IRRYR 554 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,758,203 Number of extensions: 74987 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 2 Length of query: 553 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 463 Effective length of database: 1,193,720 Effective search space: 552692360 Effective search space used: 552692360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)