BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0900.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309780|ref|YP_003773872.1| transcription regulator [Herbas...   117   9e-28
gi|300312385|ref|YP_003776477.1| SorC family transcription regul...    86   3e-18

>gi|300309780|ref|YP_003773872.1| transcription regulator
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  117 bits (294), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 148/316 (46%), Gaps = 16/316 (5%)

Query: 3   MDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTLELE 62
           +D   R A +YYV G TQ E++ER  ISR    RM+  A D  +V++++ H     LEL 
Sbjct: 8   LDLAARAAWMYYVAGNTQNEIAERLGISRQMAQRMVAYAADANLVKVQITHPVSSCLELA 67

Query: 63  HALMQRFGIERALI------SVSHNDQDRQRAMLAGLVANHLDRSLTDDS--IVAVGIGR 114
             L +R+G++   +      + + N+    + MLA   A  +++ L  ++  +V VG GR
Sbjct: 68  QGLQERYGLDVCRVVPGAGGAGNPNESQEVQQMLAVAGAELMEQYLGSEAPLVVNVGSGR 127

Query: 115 NINAVSEHAVSNTRRSVTFVCGIGGYYRGGETMNSDHICRRLASRFGGESETLYAPAVVN 174
            + A  E      R     V  IG +   G + N   +  + A + G     L AP V  
Sbjct: 128 TLKAAIERLSELERPQHQIVSMIGAFASDG-SANRYDVALQAAEKLGARFYLLPAPRVAE 186

Query: 175 SAAVRDALLANDAVRPTLDKARRADVALIGVGDINEDSQMVRMGWFTPQEIQELKRQGAV 234
           S + R     + A +     A RADV  +G+G I     M   G+    E+ EL+RQGAV
Sbjct: 187 SESDRQQWCNHRAYKIVTGLAERADVTFLGIGTIALQGAMHEDGFIDDGEVAELQRQGAV 246

Query: 235 GDMMGYDFINIQGEPTRTETHSRVIGLTVDDLRRIPD--VIAVASESSKASAMLGALRTG 292
           G+M+ + F +I G    +   +RV   T   L + P   VIA    S KA A+  ALR G
Sbjct: 247 GEMICHAF-DIDGVMLPSSLSARV---TTPPLTQRPQRPVIAFCGGSKKAEAVRAALRGG 302

Query: 293 TIKTLATTDSIA-HTL 307
            +  L T +  A H L
Sbjct: 303 WLTGLVTDEVCARHAL 318


>gi|300312385|ref|YP_003776477.1| SorC family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 136/308 (44%), Gaps = 12/308 (3%)

Query: 8   RLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQ-TLELEHALM 66
           R+A LYY   +T   +++    SRA+++R+L  A + G+VEIRV H P Q +  LE A+ 
Sbjct: 15  RVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRV-HDPQQVSGSLEAAIA 73

Query: 67  QRF---GIERALISVSHNDQDR-QRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVSEH 122
             +    I+   ++ +  D++  QR       A +++  +T  +I+ +  G  +  +++ 
Sbjct: 74  NHYRLHSIQVVPVAAAATDKETLQRVTCHA--AAYVNSLVTPGTIIGLAWGTTVAQIADQ 131

Query: 123 AVSNTRRSVTFVCGIGGYYRGGETMN--SDHICRRLASRFGGESETLYAPAVVNSAAVRD 180
            +      V  V  + G   G   +N  S+ I  R A  +G  +  L  PA  +    R 
Sbjct: 132 LLPRHVHDVD-VVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRT 190

Query: 181 ALLANDAVRPTLDKARRADVALIGVGDINEDSQMVRMGWFTPQEIQELKRQGAVGDMMGY 240
           AL    +++   D   RA + L  +G     S +   G+   +E Q L+ +G VGD+   
Sbjct: 191 ALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRDEGLVGDIATV 250

Query: 241 DFINIQGEPTRTETHSRVIGLTVDDLRRIPDVIAVASESSKASAMLGALRTGTIKTLATT 300
            F    G       ++R  G  +D   R    + V S + K   +  ALR G I  L   
Sbjct: 251 -FFRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRGGFINELIID 309

Query: 301 DSIAHTLL 308
           +  A  L+
Sbjct: 310 EPSARLLV 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 915,730
Number of extensions: 37224
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)