BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0891.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 738 0.0 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 251 8e-68 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 196 5e-51 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 191 1e-49 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 190 2e-49 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/511 (76%), Positives = 441/511 (86%) Query: 1 MSRPGFRTLTVGQRLFVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDD 60 MSRPG RTL+VGQRL VLILLA+LGLVATA VS+RQIENV+ AA+YAQ TVPSVTTLDD Sbjct: 1 MSRPGLRTLSVGQRLSVLILLALLGLVATAAVSLRQIENVYTAANYAQVNTVPSVTTLDD 60 Query: 61 ALGAFNAIQGRVYNYLTNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADRAMLA 120 A AFNAIQGR+Y YL NPD DR RL++EM V RARM + L TY +++D+ D AMLA Sbjct: 61 AQAAFNAIQGRIYQYLVNPDPRDRSRLIKEMDVQRARMQRHLHTYANAYITDETDGAMLA 120 Query: 121 DDYAHIAAFEEVVQRLLGLAGQEQSADERILVILELRAAIDSVQASFARHRSYDIALGDA 180 DD AHIAAFEEVV+RLL +A +++ D L +LE RAAID+VQASFARHRSY++ALGDA Sbjct: 121 DDRAHIAAFEEVVRRLLAVAEEDRVEDSLGLSVLEFRAAIDTVQASFARHRSYNVALGDA 180 Query: 181 SALTAREIIANALDTVLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGD 240 SALTAREII AL+TV ++A GV+L+++G GW LTRTLLRQMGGEPGDVV VM+ +S GD Sbjct: 181 SALTAREIIGQALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGD 240 Query: 241 LQQQITLKPGCRDSMMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTE 300 L Q ITLKPGCRDSMMHAIQ+M+ R+ QVV EVR NA+ LVSTAEEVS TAQ+LSRASTE Sbjct: 241 LVQTITLKPGCRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTE 300 Query: 301 QATGVEQTSEALERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAAIQQIAGK 360 QA GVEQTSEAL +IH + ST+QNARLTDQIAAAAA+EAR CA TVKQMVAAIQQIAGK Sbjct: 301 QANGVEQTSEALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGK 360 Query: 361 IVVIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHN 420 I VIDDIAYQTNLLALNATIEAAHAGEHG+GFAVVAAEVRRLAERSQ+AAQEIDEVAR N Sbjct: 361 IAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARAN 420 Query: 421 VALASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSLSS 480 V LA AE QL+ MVPTITRTS LVQ+IV+SS +QS AVSQIS AA+QLAQVIQQNSLSS Sbjct: 421 VTLACAAERQLSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSS 480 Query: 481 EELAVTSEELNRRAVLLQTTVGFFQCELGQG 511 EELAVTSEELNRRA+LLQT VGFFQC+L +G Sbjct: 481 EELAVTSEELNRRALLLQTAVGFFQCQLARG 511 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 251 bits (642), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 147/311 (47%), Positives = 206/311 (66%) Query: 196 VLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCRDSM 255 + L A ++V+ W R + Q+GGEP D + V+R +++GDL + L G + S+ Sbjct: 236 IFWLLAASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSV 295 Query: 256 MHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEALERI 315 +++ Q+M+ + V+ +V A SL S +E++S ++QALS + +QA VE+TS ++E I Sbjct: 296 LYSTQQMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEI 355 Query: 316 HGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAAIQQIAGKIVVIDDIAYQTNLLA 375 +I + NAR TD IA+ +A A V++ VAA++QIA KI +IDDIAYQTNLLA Sbjct: 356 TATIAQNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLA 415 Query: 376 LNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHNVALASTAEEQLNSMV 435 LNA IEAA AGEHG GFAVVAAEVR+LAERSQ+AAQEI VA +V LA A LN MV Sbjct: 416 LNAAIEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMV 475 Query: 436 PTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSLSSEELAVTSEELNRRAV 495 P+I +T+ LVQEI +S QS + QI+ A Q+AQ Q + +SEEL+ TSEE++ +A+ Sbjct: 476 PSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAI 535 Query: 496 LLQTTVGFFQC 506 LQ + FFQ Sbjct: 536 HLQDLMRFFQV 546 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%) Query: 213 WLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCRDSMMHAIQRMVERVCQVVTE 272 W+ + R++GGEP ++R I+ G+L ++ L+ R S+++A+ M R+ +++ Sbjct: 233 WIIAGVRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRN 292 Query: 273 VRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEALERIHGSILSTSQNARLTDQI 332 V + ++L ++ +++ TA AL++AS+EQA VE+ A+ ++ +I T ++AR T+QI Sbjct: 293 VTLSTQALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQI 352 Query: 333 AAAAAVEARACAATVKQMVAAIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGTGF 392 A AAA +A A V+ V A++ IA ++ VIDDIAYQTNLLALNA IEAA AGEHG GF Sbjct: 353 AVAAASDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGF 412 Query: 393 AVVAAEVRRLAERSQAAAQEIDEVARHNVALAS-TAEEQLNSMVPTITRTSSLVQEIVES 451 +VVAAEVR+LAERSQ++A EI +A+ +V LA T++ + + I + S + +I S Sbjct: 413 SVVAAEVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLS 472 Query: 452 SARQSAAVSQISQAATQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCELGQ 510 S Q V++I A TQL Q+N+ +SEELA+T+E + RA L + +F+ E Q Sbjct: 473 SRMQEEGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQ 531 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 149/513 (29%), Positives = 265/513 (51%), Gaps = 20/513 (3%) Query: 9 LTVGQRLFVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDDALGAFNAI 68 L++ RL++LI ++G V A +M ++ + AS+A VPS+ +L N + Sbjct: 3 LSIVNRLYILIGAVIIGCVVLAGANMVKMNRTYADASFASENVVPSLLSLSTITQGINGM 62 Query: 69 QGRVYNYLTNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADRAMLADDYAHIAA 128 + + YL ++ DRG + + R+ L+ Y + ++D D+ +L Sbjct: 63 RIATWRYLALTESVDRGAIESSFNSAKKRVEDALQKYEQEQLADATDKELLRAVRVSYQE 122 Query: 129 FEEVVQRLLGLAGQEQSADERILVILELRAAIDSVQASFARHRSYDIALGDASALTAREI 188 F++ + L LA Q + R L + + ID + + R+Y+ + A A A+E Sbjct: 123 FDKSLAEALKLANAGQWNEARAL-LANNQPVIDRLNKAMTELRAYNEKISQAGAHRAQET 181 Query: 189 IANALDTVLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQI-TL 247 +A A ++++A V+ V+ +G + R + R + + V + I++GDL ++I T Sbjct: 182 MAAARLHAILISAAVIAVVTLMGLLIARKIARSLA----EAVELAETIAEGDLTREIDTS 237 Query: 248 KPGCRDSMMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQ 307 +M A+ +M + +V VR+ ++ + + +++ LS + +QA+ +EQ Sbjct: 238 STDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQ 297 Query: 308 TSEALERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAAIQQI-------AGK 360 T+ A E + ++ ++NA DQ+A+AA+ A VKQ+V +++I A Sbjct: 298 TAAATEELTSTVKQNAENALQADQLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADI 357 Query: 361 IVVIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHN 420 I VID IA+QTN+LALNA +EAA AGE G GFAVVA EVR LA+RS +AA+EI ++ + Sbjct: 358 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDS 417 Query: 421 VA-------LASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVI 473 V+ L +A + +V ++ R + +V EI +S QS + Q++QA + + Q Sbjct: 418 VSKVENGSQLVMSAGNTMQQVVESVRRVTDVVTEISAASREQSLGIEQVNQAISHMDQST 477 Query: 474 QQNSLSSEELAVTSEELNRRAVLLQTTVGFFQC 506 Q+N+ EE ++ L +A L+ V F+ Sbjct: 478 QENAALVEEATAAAQSLQEQARQLERAVNVFKL 510 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 163/528 (30%), Positives = 268/528 (50%), Gaps = 41/528 (7%) Query: 5 GFRTLTVGQRLFVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDDALGA 64 G +T+ ++L++LI+ +LG++ AVV + Q + +A Y+ T+PSV L+ A A Sbjct: 27 GVGDMTIARKLYLLIVAVVLGVIMQAVVGLYQSHRIASSAGYSATDTIPSVLALNGATDA 86 Query: 65 FNAIQGRVYNYLTNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADRAMLADDYA 124 I+ + Y+ P A R + + MA + + +SDD DR ML D Sbjct: 87 IYGIRLNIARYVIEPTA--REKTVANMAALHQKAQDFFDQFERCCISDDTDRRMLEADRR 144 Query: 125 HIAAFEEVVQRL----LGLAGQEQSADERILVILELRAAIDSVQASFARHRSYDIALGDA 180 A +E+ R+ LG AG+E + R+ + ++ + A H++Y+ LG Sbjct: 145 FFAEYEK--HRMAMVDLGSAGKEDAL--RVAMEEKMAPTGQRLMAVLNEHKNYNEQLGRQ 200 Query: 181 SALTAREIIANALDTVLMLAAGVMLVMM--GVGWWLTRTLLRQM--GGEPGDVVMVMRHI 236 A A E + L L +AA ++++M + L R + + E D I Sbjct: 201 GAEAADEHLQ--LSIYLTIAAATLVIVMVSALSLLLVRNIRHSLHAATELADT------I 252 Query: 237 SQGDLQQQITLKPGCRDS---MMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQA 293 +GDL QI L+ RD +M ++QRM + Q++ +V +A ++ + E++ Sbjct: 253 GRGDLSSQIVLRG--RDEVTQLMLSLQRMTGSLVQILGKVNDSAATIETATREIASGNLD 310 Query: 294 LSRASTEQATGVEQTSEALERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAA 353 LS + QA +E+T A+ ++ ++ + NAR D++A +A+ A V +++ Sbjct: 311 LSSRTEAQAGSLEETVSAMGQLTTTVKQNADNARQADELAQSASGVAGQAGKVVDEVILT 370 Query: 354 IQQIAG---KIV----VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERS 406 ++ I KIV VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS Sbjct: 371 MEAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 430 Query: 407 QAAAQEIDEVARHNVA-------LASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAV 459 +AA+EI E+ +V L A + +V ++ R S +V++I +S QS + Sbjct: 431 ASAAREIKELIDDSVNKVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGI 490 Query: 460 SQISQAATQLAQVIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCE 507 +Q++QA + Q QQN+ EE A S+ L +A L V F+ E Sbjct: 491 AQVNQAIGMMDQTTQQNAALVEEAAAASQSLREQAKGLAQAVSVFRLE 538 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,146,987 Number of extensions: 37434 Number of successful extensions: 565 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 69 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)