BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0882.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310767|ref|YP_003774859.1| YecA family protein [Herbaspiri...   138   4e-34

>gi|300310767|ref|YP_003774859.1| YecA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  138 bits (348), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 118/231 (51%), Gaps = 15/231 (6%)

Query: 6   LQQPLNDDELDRLGEFL--EEAGSPGMNIELLDGYFAALICGPEAVLPSEYLPQLLG--- 60
           L QPL+D E D L +FL  +      M ++ L GY  AL  GP+ VL +E+LP++ G   
Sbjct: 3   LDQPLSDAEFDELDDFLLSDRCADDVMTMDTLHGYLTALAIGPQEVLMAEWLPRVWGSRP 62

Query: 61  -EEPPFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDEHG---VAHGNDW 116
            + P F+N +EA  I  LI R  N IA T     +E   Y P+  E EH    +     W
Sbjct: 63  EDTPKFKNGKEAERITSLIARSMNEIAITFEVAPKE---YEPLFCEREHEGKPLLDAEAW 119

Query: 117 AQGFMHGVHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNLRPPAITPDKRDAVLQA 176
           A GF  G+  R   W+E+  S      M PI+ L  +   +   +     P K   +   
Sbjct: 120 AWGFWEGIQLRAEQWDEIFHSN-LAPLMRPIYLLGSDELEEEETKL-IDDPIKTHKLAIE 177

Query: 177 MIVSVTHIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCCAA 227
           +  ++ HI+RY+ P R+SAV    R A PK  RNDPCPCGSG+KYK CC A
Sbjct: 178 IEAAIPHIHRYWAPKRKSAVEQVQRDA-PKTGRNDPCPCGSGKKYKKCCGA 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 781,016
Number of extensions: 31716
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)