BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0879.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...   121   9e-29
gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...    72   7e-14

>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 160/328 (48%), Gaps = 33/328 (10%)

Query: 86  GRLSHLLSVDQFSRDSAEHLFMLADVMQPIARRR-KVSRVLEGAVLANLFFEASTRTRLS 144
           G L HLL+++   R    H+   A     I  R  K   ++ G  + NLFFE STRTR +
Sbjct: 10  GELQHLLTIEGLPRSILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFFENSTRTRTT 69

Query: 145 FASAFMRLGGSVCDTTGFTYSSMAKGESIADTSRTVSG-YADVIVVRHPEQGS---VAQF 200
           F  A  RL   V +      SS +KGES+ DT   ++  +AD+ VVRH + G+   +A+ 
Sbjct: 70  FEIASKRLSADVINLN-IQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSGAPFLIAKH 128

Query: 201 AAATQ---VPLINGGDGAGEHPTQALIDLYTV---QREFSRLGKLVDGAHIVITGDLKYG 254
              T+   V ++N GDG   HPTQ L+D+YT+   +++F+ L        + I GD+ + 
Sbjct: 129 LIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNL-------RVAIVGDILHS 181

Query: 255 RTAHSLIKLLSLYRNMRFTLVSPPSLEMPAEIVKRIAARGHTVTSTDVLAHALPDADVIY 314
           R A S I  L+         + P +L +P+ + +      H       +   L D DVI 
Sbjct: 182 RVARSDIHALTTLGVPEVRAIGPRTL-LPSGLEQMGVRVFHN------MEEGLKDVDVII 234

Query: 315 TTRIQRERLTGEKI---DDFLAAFEINKKLVDQHGRPDVIVMHPLPRDSRPGAHDLHTDL 371
             R+Q ER++G  +    +F  ++ +  + +    +PD IVMHP P +      ++ + +
Sbjct: 235 MLRLQNERMSGALLPSAQEFFKSYGLTPERLAL-AKPDAIVMHPGPMNR---GVEIDSAV 290

Query: 372 DGDARLAIFRQTDNGVPVRMAIFATLLG 399
              A+  I  Q   G+ VRMA+ + + G
Sbjct: 291 ADGAQAVILPQVTFGIAVRMAVMSIVAG 318


>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 144/317 (45%), Gaps = 26/317 (8%)

Query: 88  LSHLLSVDQFSRDSAEHLFMLADVMQPIARRRKVSRVLEGAVLANLFFEASTRTRLSFAS 147
           + H L    F+ D  E++   + V++   +  +    L    L  +F + STRTRLSF +
Sbjct: 3   IKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEA 62

Query: 148 AFMRLGGSVCDTTGFTYSSMAKGESIADTSRTVSGYADVIVVRHPEQGSVAQFAAATQVP 207
              ++GG+         S + +GE + D ++ +S   DVI++R   Q  + +FA  ++VP
Sbjct: 63  GMHQMGGAAIYLNTRD-SQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVP 121

Query: 208 LINGGDGAGEHPTQALIDLYT-VQREFSRLGKLVDGAHIVITGDLKYGRTAHSLIKLLSL 266
           +ING     +HP Q L D++T ++   S  GK+V        GD       +S ++   +
Sbjct: 122 VINGLTNE-QHPCQVLADVFTYIEHHGSIQGKIV-----AWVGDA--NNMLYSWLQAAEV 173

Query: 267 YRNMRFTLVSPPSLEM-PAEIVKRIAARGHTVTSTDVLAHALPDADVIYTTRIQRERLTG 325
           +      + +P   ++ PA++      + +T  +    A A  DAD++ T          
Sbjct: 174 F-GFHVNVSTPKGYDIDPAQVSP--GNKNYTFFADP--ADACQDADLVTTDVWTSMGFEA 228

Query: 326 EKIDDFLAAFEINKKLVDQ----HGRPDVIVMHPLPRDSRPGAHDLHTDLDGDARLAIFR 381
           E  +  L AF+    +VDQ      + D + MH LP  +  G       +DG  +  ++ 
Sbjct: 229 EN-NARLKAFD--GWIVDQAKMARAKKDALFMHCLP--AHRGEEVAAEVIDG-PQSVVWE 282

Query: 382 QTDNGVPVRMAIFATLL 398
           + +N + V+ A+   L+
Sbjct: 283 EAENRLHVQKALLEYLV 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,287,914
Number of extensions: 52061
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)