BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0877.p (426 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 841 0.0 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 238 5e-64 gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferas... 169 3e-43 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 167 2e-42 gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferas... 164 1e-41 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/426 (95%), Positives = 422/426 (99%) Query: 1 MTSKANNQELQQRKNAATPRGVGVMCDFYAERAANAELWDVEGRRFIDFAAGIAVLNTGH 60 MTSKANNQELQQRKNAATPRGVGVMCDFYAERAANAELWDVEGRRFIDFAAGIAVLNTGH Sbjct: 1 MTSKANNQELQQRKNAATPRGVGVMCDFYAERAANAELWDVEGRRFIDFAAGIAVLNTGH 60 Query: 61 RHPKLLDAMRAQMEKFTHTAYQIVPYASYVELAERINAVTPGHYPKKTAFFSTGAEAVEN 120 RHPKLLDAMRAQM+KFTHTAYQIVPYASYVELAERIN +TPG+YPKKTAFFSTGAEAVEN Sbjct: 61 RHPKLLDAMRAQMDKFTHTAYQIVPYASYVELAERINRLTPGNYPKKTAFFSTGAEAVEN 120 Query: 121 AIKIARAYTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALNG 180 AIKIARA+TGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSAL+G Sbjct: 121 AIKIARAHTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALHG 180 Query: 181 ISTEDALEAVKGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGILLI 240 I++EDALEAVKGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRA+CDEHGILLI Sbjct: 181 ITSEDALEAVKGLFKSDIEAKRVAAIILEPVQGEGGFYAAPADFMRGLRALCDEHGILLI 240 Query: 241 ADEVQSGYGRTGKLFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT 300 ADEVQSGYGRTGKLFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT Sbjct: 241 ADEVQSGYGRTGKLFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGT 300 Query: 301 YAGNPLAVASALAVLDVMEEEKLVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAV 360 YAGNPLA+ASALAVLDVMEEE+LV RGQRLGDKLQEHLKELRS+VPQIAEVRGVGAMVAV Sbjct: 301 YAGNPLAIASALAVLDVMEEEQLVTRGQRLGDKLQEHLKELRSSVPQIAEVRGVGAMVAV 360 Query: 361 EFADPATGKPDAEYTKKVQQHALSNGLLLLSCGSYGNVIRFLFPLTIPDAVMDEALGILA 420 EFADPATGKPDAEYTKKVQQHAL+NGLLLL+CGSYGNVIRFLFPLTIPD VMDEALGILA Sbjct: 361 EFADPATGKPDAEYTKKVQQHALNNGLLLLTCGSYGNVIRFLFPLTIPDTVMDEALGILA 420 Query: 421 NAIKLA 426 AI+LA Sbjct: 421 KAIRLA 426 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 238 bits (608), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 154/425 (36%), Positives = 235/425 (55%), Gaps = 21/425 (4%) Query: 9 ELQQRKNAATPRGVGVMCDFYAERAANAELWDVEGRRFIDFAAGIAVLNTGHRHPKLLDA 68 EL R + RG G M ++A D +G FID +AG+ V + G +P++++A Sbjct: 32 ELSARTESMA-RGGGRM-PIAMDQAFGVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEA 89 Query: 69 MRAQMEKFTHTAYQIVPYASYVELAERINAVTP-GHYPKKTAFFSTG-AEAVENAIKIAR 126 +R Q E H+ V + ELA +I+ + P G FF+ G ++A+E A+K A+ Sbjct: 90 IRKQSESLMHSME--VNSSKRTELAAKISEIMPDGLRGDCITFFTQGGSDALEAAVKFAK 147 Query: 127 AYTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYPSALNG--ISTE 184 TGR +IAF GG+HG ALT A Y+ GFGPF G V HAPYP A ++ Sbjct: 148 RVTGRHQIIAFHGGYHGIWNASNALTTGTA-YRKGFGPFMGGVIHAPYPYAYRFPFDTSH 206 Query: 185 DALEAVKGLFKSDI------EAKRVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGIL 238 + E + G + + A VAA+I+EPVQGEGG+ +F++ LR CD G L Sbjct: 207 KSAEQIAGEYVDYLLNTPYTAADDVAAVIVEPVQGEGGYVPPSPEFLQILRKACDRSGAL 266 Query: 239 LIADEVQSGYGRTGKLFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLG 298 LI DEVQ+G GRTGK++A+EH V PD++T K + G MP++ + R+++ G Sbjct: 267 LIVDEVQAGAGRTGKMWAVEHSGVKPDMLTFGKGIGGDMPMAGLVMRSDLAAKIPDGSQP 326 Query: 299 GTYAGNPLAVASALAVLDVMEEEK--LVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGA 356 T+A N ++ A AL + ++++ + LV R LG + QE ++ S P + EVRG G Sbjct: 327 NTFAANSISAAVALTNISILQDPRLDLVNRAHTLGLEAQERIRSFNS--PWVGEVRGRGL 384 Query: 357 MVAVEFADP-ATGKP-DAEYTKKVQQHALSNGLLLLSCGSYGNVIRFLFPLTIPDAVMDE 414 M+ +E + T +P E K+ + + +G+L++ CG Y NV+R + LTIP ++M + Sbjct: 385 MIGIELVENRETREPLSREKLGKLMDYVVGHGVLMIPCGRYTNVMRVMPSLTIPRSLMFK 444 Query: 415 ALGIL 419 L I Sbjct: 445 GLDIF 449 >gi|300312624|ref|YP_003776716.1| acetylornithine aminotransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/398 (33%), Positives = 203/398 (51%), Gaps = 42/398 (10%) Query: 38 LW--DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMEKFTHTAYQIVPYASYVELAER 95 +W D G+R++D+ G AV GH + DA+ AQ +K + + S +ELA+ Sbjct: 28 MWLTDHNGKRYLDYLQGWAVNTLGHAPQCIADALAAQSKKLINPSPAFYNEPS-IELAKL 86 Query: 96 INAVTPGHYPKKTAFFSTGAEAVENAIKIARAY---------TGRPGVIAFAGGFHGRTM 146 + A + + F ++G EA E AIK+AR + + R +I F FHGRT+ Sbjct: 87 LTANS---VFDRVFFANSGGEANEGAIKLARKWGKKNPAADGSARFEIITFKHSFHGRTL 143 Query: 147 MGMALTGKVAPYKLGFGP-FPGDVFHAPYPSALNGISTEDALEAVKGLFKSDIEAKRVAA 205 M+ +GK + F P PG +P A+ + LE+VK L + A Sbjct: 144 ATMSASGKDG-WDTMFAPQVPG------FPKAV-----LNDLESVKALI-----GEHTVA 186 Query: 206 IILEPVQGEGGFYAAPADFMRGLRAICDEHGILLIADEVQSGYGRTGKLFAMEHYDVLPD 265 ++LEPVQGEGG A +FM+GLR++ E +LLI DEVQSG GRTG+LFA +H + PD Sbjct: 187 VMLEPVQGEGGVIPASKEFMQGLRSLTKEKNLLLIVDEVQSGMGRTGQLFAYQHSGIEPD 246 Query: 266 LMTMAKSLAGGMPLSAVNGRAEIMDAPAPGGLGGTYAGNPLAVASALAVLDVMEEEKLVA 325 +MT+AK + GG+PL+A+ R EI A G GGTY GNPL A +AV+ + + + Sbjct: 247 IMTLAKGIGGGVPLAALLAREEIACFEA-GEQGGTYNGNPLMTAVGVAVIKELLKPGFME 305 Query: 326 RGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAVEFADPATGKPDAEYTKKVQQHALSN 385 + G L++ E+ E RG G + A++ G+ + ++ Sbjct: 306 SVRERGQYLRQRSLEISEKYGFEGE-RGEGLLRALQL-----GRDIGPQIVEAARNLEPV 359 Query: 386 GLLLLSCGSYGNVIRFLFPLTIPDAVMDEALGILANAI 423 GLLL S N++RF+ L + +D+ +L + Sbjct: 360 GLLLNS--PRPNLLRFMPALNVTKEEIDQMFSMLEEVL 395 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 138/410 (33%), Positives = 203/410 (49%), Gaps = 37/410 (9%) Query: 40 DVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMEKFTHTAYQIVPYASYVELAERINAV 99 D G +D AG+ + GH HPK++ A++ + + + + S ELAER+ A Sbjct: 42 DDAGNTILDGTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPSFQLGHPSAFELAERLKAY 101 Query: 100 TPGHYPKKTAFFSTGAEAVENAIKIARAY------TGRPGVIAFAGGFHGRTMMGMALTG 153 T G+ + +G+EAV+ A+KIA AY R +I G+HG GM++ G Sbjct: 102 T-GNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIGRERGYHGVGFGGMSVGG 160 Query: 154 KVAPYK-LGFGPFPGDVFHAPYPSALN-----------GISTEDALEAVKGLFKSDIEAK 201 K PG V H P+ L G D LE + L +A Sbjct: 161 IGGNRKTFSTALLPG-VDHLPHTHNLEKNAFTKGEPEYGAHLADELERLVTLH----DAS 215 Query: 202 RVAAIILEPVQGEGGFYAAPADFMRGLRAICDEHGILLIADEVQSGYGRTGKLFAMEHYD 261 +AA+I+EPV G G P +++ LR IC +HGILLI DEV +G+GR G FA +++D Sbjct: 216 NIAAVIVEPVAGSTGVLIPPKGYLKRLREICTKHGILLIFDEVITGFGRLGTPFASDYFD 275 Query: 262 VLPDLMTMAKSLAGG-MPLSAVNGRAEIMDA--PAPGGL----GGTYAGNPLAVASALAV 314 V PD+ T AK L G +P+ AV + EI DA P G+ G TY+G+PLA A+ LA Sbjct: 276 VEPDIFTTAKGLTNGVVPMGAVFVKPEIHDAFMNGPDGIELFHGYTYSGHPLACAAGLAS 335 Query: 315 LDVMEEEKLVARGQRLGDKLQEHLKELRSAVPQIAEVRGVGAMVAVEFADPATGKPDAEY 374 L+V + E ++ Q + D QE LR +P + +VR +G + +E A Y Sbjct: 336 LEVFQTEGVLENAQAVADYFQEAAHALR-GLPHVIDVRTIGLIAGIELASIPGRVGARAY 394 Query: 375 TKKVQQHALSNGLLLLSCGSYGNVIRFLFPLTIPDAVMDEALGILANAIK 424 V+ A ++G+L+ G++I PL I +DE G LA +K Sbjct: 395 DAFVR--AFNDGILIRVT---GDIIALSPPLIINKQQIDELFGKLAAILK 439 >gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 164 bits (415), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 133/421 (31%), Positives = 202/421 (47%), Gaps = 37/421 (8%) Query: 2 TSKANNQELQQRKNAATPRGVGVMCDFYAE-----RAANAELWDVEGRRFIDFAAGIAVL 56 T+ A +++R+N G GV FY + A+ L D +G ++D A V Sbjct: 21 TAPATRALIERRRNTF---GDGVPL-FYRDPVHFVSASGVWLRDQDGLEYLD--AYNNVP 74 Query: 57 NTGHRHPKLLDAMRAQMEKF-THTAYQIVPYASYVELAERINAVTPGHYPKKTAFFSTGA 115 + GH HP++++A+ Q THT Y SY AER+ P K F S+G Sbjct: 75 SVGHCHPRVVEAVSKQAATLNTHTRYLSDVVTSY---AERLLGTLPREL-SKVLFTSSGT 130 Query: 116 EAVENAIKIARAYTGRPGVIAFAGGFHGRTMMGMALTGKVAPYKLGFGPFPGDVFHAPYP 175 E+V+ A+++AR YTG G I +HG + VA FGP + Sbjct: 131 ESVDLAMRLARLYTGGSGFIVTRFAYHGHST-------AVAEITPAFGPGVPIGINVRLV 183 Query: 176 SALNGISTEDALEAVKGLFKSDIEAK---------RVAAIILEPVQGEGGFYAAPADFMR 226 A +G +DA +K F D+ A R A +IL+ V G + P F++ Sbjct: 184 DAPDGYR-QDAPVGIK--FAQDVAAAIADMERHGIRFAGLILDTVCSSDGLFVDPPGFLK 240 Query: 227 GLRAICDEHGILLIADEVQSGYGRTGK-LFAMEHYDVLPDLMTMAKSLAGGMPLSAVNGR 285 A + G + IADEVQ G+GRTG+ ++ E + ++PD++ M K + GMP++A R Sbjct: 241 DAIATVKKAGGVFIADEVQPGFGRTGEGMWGFERHRIVPDIVVMGKPMGNGMPIAATVTR 300 Query: 286 AEIMDA-PAPGGLGGTYAGNPLAVASALAVLDVMEEEKLVARGQRLGDKLQEHLKELRSA 344 A+IM A G T+ GN + A+A AVLDV+E E L+ + G L+ L++L+ Sbjct: 301 ADIMQAFTERSGYFNTFGGNTVCCAAASAVLDVIESEGLINNAKETGASLKLGLEQLKGQ 360 Query: 345 VPQIAEVRGVGAMVAVEFADPATGKPDAEYTKKVQQHALSNGLLLLSCGSYGNVIRFLFP 404 I +VR +G AVEF P T D + V +L+ +CG GN+++ P Sbjct: 361 HQCIGDVRAIGLYAAVEFVLPDTKTADTDMALHVVNTLRQKRILISTCGPAGNILKIRPP 420 Query: 405 L 405 L Sbjct: 421 L 421 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,353,698 Number of extensions: 58255 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 10 Length of query: 426 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 338 Effective length of database: 1,203,190 Effective search space: 406678220 Effective search space used: 406678220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)