BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0876.p (380 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 744 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 260 1e-70 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 257 9e-70 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 241 6e-65 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 236 3e-63 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/380 (94%), Positives = 369/380 (97%), Gaps = 4/380 (1%) Query: 1 MMAAHAMKQSAQAFAPEASSNSDVLVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGP 60 MMAA+AMKQ+AQ E+ SDVLVQFCGVKKTYDGENLIVK+LDLDIRRGEFLTLLGP Sbjct: 1 MMAAYAMKQAAQ----ESVQQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGP 56 Query: 61 SGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVA 120 SGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVA Sbjct: 57 SGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVA 116 Query: 121 YPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLM 180 YPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLM Sbjct: 117 YPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLM 176 Query: 181 DEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAP 240 DEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAP Sbjct: 177 DEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAP 236 Query: 241 VTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAIT 300 VTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCTVRL DG +TGLNVHRAHAGQ+IT Sbjct: 237 VTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSIT 296 Query: 301 ACVRPERIRLAAGGSAEPNAIRASIAGLIYFGDHVRVRCSVAGQEDCFVKLSLSDPALSG 360 ACVRPERIRLAAGGSAEPN+IRASIAGLIYFGDHVRVRC+VAGQEDCFVKLSLSDPALSG Sbjct: 297 ACVRPERIRLAAGGSAEPNSIRASIAGLIYFGDHVRVRCTVAGQEDCFVKLSLSDPALSG 356 Query: 361 LTEGSSVVLHTAQDRLRCFL 380 L+EGSSVVLH AQDRLRCFL Sbjct: 357 LSEGSSVVLHVAQDRLRCFL 376 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 260 bits (664), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/292 (46%), Positives = 186/292 (63%), Gaps = 4/292 (1%) Query: 26 VQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 85 VQ VKK + G I++ +D+DI GEF L+GPSG GK+T L MLAG E TGGEI + Sbjct: 4 VQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 86 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQ 145 G ++N V P R+I MVFQNYAL+PHMT+ N+A+ L++ K D+A + +VK+A D++ Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 146 MGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKR 205 + + DRYP QLSGGQ+QRVA+ R +V DPQ+ L DEPL LD +LR M+ E+K LH+R Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 206 LGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNN-RFK 264 L T +YVTHDQ EA+TM+D++ V G+++Q +LY+YP N FVA FIG F Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFI 242 Query: 265 GSVESVQGEHCTVRLADGTVVTGL--NVHRAHAGQAITACVRPERIRLAAGG 314 + V ADGT V + + GQ +T VRPE + + A G Sbjct: 243 PATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAG 294 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 257 bits (657), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 135/308 (43%), Positives = 191/308 (62%), Gaps = 11/308 (3%) Query: 39 NLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL------DGQLLNR 92 N I+K + ++++RGE + LLGPSGSGKTT L +AG E P G I + DG Sbjct: 20 NPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFE 79 Query: 93 VPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDR 152 +P +RN+G+VFQ+YAL+PH T+A NVAY L +RK +VK L + +G G+R Sbjct: 80 MPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGER 139 Query: 153 YPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVY 212 YP QLSGGQQQRVA+AR LV++PQ++L+DEPL LD +LRE + L+ L RLG++ + Sbjct: 140 YPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALM 199 Query: 213 VTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQG 272 VTHDQ EA+ +SDR+ + + G I+Q +Y+ P+ F A F+G NN+ V S +G Sbjct: 200 VTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLSREG 259 Query: 273 EHCTVRLADGTVVTGLNVHR-AHAGQAITACVRPERIRLAAGGSAEPNAIRASIAGLIYF 331 E TV+L GT V L G+ +T +R E++R++ G A NAIR ++ +Y Sbjct: 260 ERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRIS--GEASDNAIRLPLSTCMYL 317 Query: 332 GDHVRVRC 339 GD R C Sbjct: 318 GD--RWEC 323 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 241 bits (616), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 131/335 (39%), Positives = 192/335 (57%), Gaps = 9/335 (2%) Query: 19 SSNSDVLVQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFP 78 S V ++ K++ ++ LDL I GE L LLGPSG GKTT L M+AG EFP Sbjct: 3 SHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFP 62 Query: 79 -TGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKV 137 GG + + + +P KR +GMVFQNYALFP+M++ +N+AY + +RK+ R +V Sbjct: 63 DEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERV 122 Query: 138 KQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQL 197 ++ L+MV + R QLSGGQ+QRVALAR L +P+++L+DEPL ALD +LRE ++ Sbjct: 123 ERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRS 182 Query: 198 ELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFI 257 +L L + LG+T +YVTHDQ EA+ + DR+ V ++G I Q+ E+Y +P N FVA FI Sbjct: 183 DLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFI 242 Query: 258 GDNNRFKGSVESVQGEHCTVRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAE 317 G NR G V + ++L GT+ + A AGQ A RPE + + A+ Sbjct: 243 GAMNRVDGIVAGDR-----LQLPTGTLPLPPD---AVAGQPAQALFRPEDVEVIDITEAD 294 Query: 318 PNAIRASIAGLIYFGDHVRVRCSVAGQEDCFVKLS 352 + +R + + GD R + + + S Sbjct: 295 AHCLRGKLINTFFLGDRTRFEIEIGAERPVIAETS 329 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 236 bits (601), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/286 (43%), Positives = 178/286 (62%), Gaps = 3/286 (1%) Query: 31 VKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLL 90 ++KTYDG ++ L+LDIR GEF L+GPSG GK+T L ML G E +GGE+ + GQ++ Sbjct: 9 LRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAIGGQVV 68 Query: 91 NRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFG 150 N +PP +R I MVFQ+YAL+PHM + +N+A+ L V ++ +A+++ A ++++ Sbjct: 69 NHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILKIDHLL 128 Query: 151 DRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTF 210 R P +LSGGQ+QRVA+ R +V P+L L DEPL LD LR +LE+ LH++L T Sbjct: 129 QRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATI 188 Query: 211 VYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDN--NRFKGSVE 268 VYVTHDQ EA+T+ D++ V +G IQQ ELY+ P N FVA FIG N F+G V Sbjct: 189 VYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMNFFQGVVT 248 Query: 269 SVQGEHCTVRLADGT-VVTGLNVHRAHAGQAITACVRPERIRLAAG 313 V +A G ++ ++ G A+T +R E+IR G Sbjct: 249 RCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLG 294 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,165,412 Number of extensions: 47971 Number of successful extensions: 535 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 146 Length of query: 380 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 293 Effective length of database: 1,207,925 Effective search space: 353922025 Effective search space used: 353922025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)