BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0875.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310413|ref|YP_003774505.1| spermidine/putrescine ABC trans...   645   0.0  

>gi|300310413|ref|YP_003774505.1| spermidine/putrescine ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 347

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/347 (93%), Positives = 338/347 (97%)

Query: 1   MKRLSPALLSPLALGLLFSGAASAAELTVVNFGGANANAQKVAYVDPFQKSTGTKVVTSE 60
           MKRL+PALLSPLALGLLFSGAA AAELTVVNFGGAN NAQKVAYV+PFQKSTGTKVVT+E
Sbjct: 1   MKRLTPALLSPLALGLLFSGAACAAELTVVNFGGANGNAQKVAYVEPFQKSTGTKVVTAE 60

Query: 61  FNGELAKVKAMVETKKVSWDVVEIDGGDLTRACDDGLIEKLDLAKTIKKEDFIPQATVSE 120
           FNGELAKVKAMVETKKVSWDVVEIDGGDL RACDDGLIEKLDLAKTIKK+D+IP+ATVSE
Sbjct: 61  FNGELAKVKAMVETKKVSWDVVEIDGGDLNRACDDGLIEKLDLAKTIKKDDYIPEATVSE 120

Query: 121 CGMGAFVWSTVLAYNADKLKTAPTGWADFWDTKKFPGKRGMKKSAEYNLEFALMADGVPA 180
           CGMGAFVWSTVLAYN DKLKT PTGWADFWDTKK+PGKRGMKKSA++NLEFALMADGVP 
Sbjct: 121 CGMGAFVWSTVLAYNGDKLKTPPTGWADFWDTKKYPGKRGMKKSAQFNLEFALMADGVPT 180

Query: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240
           KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR
Sbjct: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240

Query: 241 EGKNLKVVWNGSVYTLDYWVIPKGSPNKALAEKFISFASQPETQKVYADNIAYGPVNKGA 300
           EGKNLKVVW GSVYTLDYWVIPKGSPNKAL EKFISFASQP+TQK YA+NIAYGPVNKGA
Sbjct: 241 EGKNLKVVWAGSVYTLDYWVIPKGSPNKALGEKFISFASQPDTQKTYANNIAYGPVNKGA 300

Query: 301 LKLLDAKTLANLPTSPANAKDALQLSLQFWTDHGEELEQRFAAWIAK 347
           LKLLDAKTLANLPTSPANAKDA+QLSLQFWTDHGEELEQRFAAWIAK
Sbjct: 301 LKLLDAKTLANLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,014,331
Number of extensions: 40917
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)