BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0870.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum ser...    72   8e-14

>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score = 71.6 bits (174), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 20/172 (11%)

Query: 156 HHARRDAAGGFCYLNNAAIAAQML--SQRHSRVLVLDTDMHHGQGIQEIFYTRRDVMYVS 213
           HHA  D   GFC  N+AAIAA+++   +R +RV ++D D+H G G   I      V  +S
Sbjct: 131 HHAYGDHGAGFCVFNDAAIAARLMQAERRAARVAIVDLDVHQGNGTAAILARDDSVFTLS 190

Query: 214 IHGDPENFYPVVAGFEDERGSGEGHGYNLNLPMPHGAPEAVFFERLTQACRAI-TLYQPE 272
           +HG  +N YP    FE E+        +L++ +P G  +  +   L QA   +   + P+
Sbjct: 191 LHG--QNNYP----FEKEQS-------DLDVALPDGVGDEDYLCALQQALATLQQRFAPQ 237

Query: 273 VLVLSLGFDIFEDDPQSVVGVSTAGFERLGREVAALG----LPTLVVQEGGY 320
           +L+   G D  E D    + +S AG     + V +      +P  V   GGY
Sbjct: 238 LLIYLAGADPHEGDRLGKMKLSLAGLAARDQAVFSYAREHEIPVAVTMAGGY 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,255,123
Number of extensions: 58993
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)