BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0865.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309390|ref|YP_003773482.1| glutamine amidotransferase [Her...    65   5e-12
gi|300309844|ref|YP_003773936.1| glutamine amidotransferase [Her...    62   6e-11

>gi|300309390|ref|YP_003773482.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 65.1 bits (157), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 8/149 (5%)

Query: 50  IVILGSDHSVND--ALPWIAAEKSLLEDALARDVPVLGHCFGAQLLARAMGAKVTRNIC- 106
           +++LG   +V D  A PW+ AE + L   L  D+P LG   GAQL+A A+ A+V    C 
Sbjct: 51  LIVLGGPIAVYDTEAYPWLRAEIAWLRARLLEDLPTLGLGLGAQLMAAALHARVYPGSCG 110

Query: 107 PNIGWGQVWITPPAQQRMRLPRL----AWLFNWHYDTFEIPTGAVRTMYGSHCLNKGFLR 162
             IGW ++   P   +   L +L      + +WH DTF++P GA          ++ F  
Sbjct: 111 KEIGWSRLQAGPHLDEHAWLRQLVDQETRVLHWHGDTFDLPRGARHLASSDMYPHQAFAW 170

Query: 163 GRQ-WGFQGHMEVTEESIRRWCASGREEL 190
           GR     Q H EV   ++ +W      E+
Sbjct: 171 GRHCLALQFHPEVDVRTVEQWMLGHAHEI 199


>gi|300309844|ref|YP_003773936.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 16/203 (7%)

Query: 1   MRPIAIFQHEATQGPGVLLEHLQQHALPYRL-YHSAAQDDVPRDASQFAGIVIL--GSDH 57
           M+     +H   +  G+L   L  H   YRL Y  A  +     A++ A ++I+  G   
Sbjct: 1   MKEAIALRHVHFEDVGILDSLLASHG--YRLRYIDATIEQADTAAAEQADLLIVLGGPIG 58

Query: 58  SVNDAL-PWIAAEKSLLEDALARDVPVLGHCFGAQLLARAMGAKVTRNICPNIGWGQVWI 116
           + ++ L P++  E  L+   L +  P+LG C GAQL+ARA+GA+V       IG+  + +
Sbjct: 59  AYDEGLHPFLLRELDLIARRLQQQRPLLGICLGAQLIARALGAEVAPMGLKEIGYAPLDL 118

Query: 117 TPPAQQRMRLPRLAWL-----FNWHYDTFEIPTGAVRTMYGSHCLNKGFLRGRQ-WGFQG 170
           +       RL  LA L      +WH D F IP GA        C ++ F  G      Q 
Sbjct: 119 STEG----RLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQF 174

Query: 171 HMEVTEESIRRWCASGREELLRA 193
           H+E     I +W      EL +A
Sbjct: 175 HLEADPARINQWLVGHACELGQA 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 848,562
Number of extensions: 36771
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)