BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0863.p
         (360 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...   643   0.0  
gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...    59   8e-10

>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/358 (87%), Positives = 339/358 (94%), Gaps = 1/358 (0%)

Query: 1   MILTSRLRQAARLLLISASLSWCASVAAQAVEPPQPVEGSWVAPSFQFHTGQTLDHLRLH 60
           M LT RLR  ARLLL SA+L  C S A QA +PP+PVEG WVAP FQFHTGQTL++LRLH
Sbjct: 1   MTLTFRLRHVARLLLSSAALMLC-SAATQAADPPRPVEGDWVAPRFQFHTGQTLENLRLH 59

Query: 61  YLTLGERSNPAVLVLHGTYQSAGAMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSS 120
           Y+TLG+R+NPAVLVLHGTYQSA AMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSS
Sbjct: 60  YVTLGDRANPAVLVLHGTYQSAQAMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSS 119

Query: 121 KPSDGLRAAFPQYNYADMVLAQYRMLTEGMGIHHLRLIIGNSMGGMQTWLWGGSYPGFAD 180
           KPSDGLRAAFPQYNYADMVLAQYRMLTEGMGI HLRLIIGNSMGGMQTW+WGG+YPGFAD
Sbjct: 120 KPSDGLRAAFPQYNYADMVLAQYRMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFAD 179

Query: 181 GLVPMAAQPTEMASRNWMMRRMLVESIKQDPAWNHGNYTSQPPSLRLANNMFVFATNGGT 240
           GLVPMA+QPTEMASRNWMMRRMLVESIKQDPAWN+GNYT+QPPSLRLANNMFVFATNGGT
Sbjct: 180 GLVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGT 239

Query: 241 LAYQALAGTHAQADKLVDDRLAAPVTADANDFIYQWGSSADYDAAPGLARIKVPVLAINS 300
           LAYQA+AG+HAQADKLVD+RLAAPVTADANDFIYQWGSSADY+AAPGL++IK PVLAINS
Sbjct: 240 LAYQAMAGSHAQADKLVDERLAAPVTADANDFIYQWGSSADYNAAPGLSKIKAPVLAINS 299

Query: 301 ADDERNPPETGIMQAALQQVPTARLLLIPASAETRGHGTTGMARFYARELAQFLQSLP 358
           ADDERNPPETG+MQAAL++VP+A+LLLIPASAETRGHGTTGMARFY REL QF++ LP
Sbjct: 300 ADDERNPPETGVMQAALKEVPSAQLLLIPASAETRGHGTTGMARFYVRELEQFIKGLP 357


>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 32/238 (13%)

Query: 61  YLTLGERSNPAVLVLHG---TYQSAGAMLSK-DFGG---QLFGPGQPLDASKYFIIIPDG 113
           Y TL    + AVLV H    ++  AG      D  G    + GPG+ LD  ++F+I  + 
Sbjct: 35  YGTLNADKSNAVLVCHALNASHHVAGVYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNN 94

Query: 114 IGVGKSS------KPSDG--LRAAFPQYNYADMVLAQYRMLTEGMGIHHLRLIIGNSMGG 165
           +G    S       P+ G    A FP     D V AQ R L + +GI     ++G S+GG
Sbjct: 95  LGSCFGSTGPMHANPATGKPYGADFPVVTVEDWVNAQAR-LADRLGITCFAAVMGGSLGG 153

Query: 166 MQTWLWGGSYPGFADGLVPMAAQPTEMASRNWMMRRMLVESIKQDPAWNHGNYTSQPPSL 225
           MQ   W   YP      + +A+ P +++++N     +  ++I  DP ++ G++ +     
Sbjct: 154 MQALAWSMMYPDRLRHCLVIASTP-KLSAQNIAFNDVARQAILTDPQYHGGDFYAHG--- 209

Query: 226 RLANNMFVFATNGGTLAYQALAGTHAQADKLVDDRLAAPVTADANDFIYQWGSSADYD 283
                  V   NG  +A      T+     L DD +A     D     YQ+G   D++
Sbjct: 210 -------VVPKNGLRVARMVGHITY-----LSDDDMAEKFGRDLRSGQYQFGYGVDFE 255


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,242,180
Number of extensions: 56766
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,212,660
Effective search space: 332268840
Effective search space used: 332268840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)