BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0857.p (502 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 880 0.0 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 410 e-115 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 408 e-115 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 359 e-100 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 358 e-100 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/502 (87%), Positives = 456/502 (90%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 MLQLTGIKKNFGPVTVLRGVD++V AGEVHALLGENGAGKSTLMKIL GIV PDAGEIRI Sbjct: 5 MLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEIRI 64 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 120 DGQPCRFDSY AIA GVGVVFQEFSLIPYLDAVDNMFLARELRS G L RA MRRRA Sbjct: 65 DGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRRAQ 124 Query: 121 RIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRV 180 II QLGV I LDVPVCKLSVAQQQFVEIAKALAL+ARILVLDEPTATLTPAEVEHLF V Sbjct: 125 EIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEHLFAV 184 Query: 181 MRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIE 240 MR LR QGVAIIFISHHLEEIFEICDRITVLRDGAYVA+CA EVDQARLVEMMVGRRIE Sbjct: 185 MRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVGRRIE 244 Query: 241 NCFPPKSATTIAAAAEVVLEVQELQLKRNAPVSRFQLRRGEILGFAGLVGSGRTETVLAM 300 NCFPPK A EVVLEV LQL+R APVS+FQLRRGEILGFAGLVGSGRTETVLAM Sbjct: 245 NCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLRRGEILGFAGLVGSGRTETVLAM 304 Query: 301 LGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYGK 360 LGAH AL CKLSM GVPLRFADPAQALQAGIGLLPESRKEQGLITSF ILHN+SLNNYGK Sbjct: 305 LGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFSILHNVSLNNYGK 364 Query: 361 YRKGGLFLDRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVIARWINHHMQVLI 420 YR GGLFLDRRRE QAT+AAM+RV VKAP A RVDTLSGGNQQKVVIARWINH M+VLI Sbjct: 365 YRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWINHAMKVLI 424 Query: 421 FDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVE 480 FDEPTRGIDVGAK+EIYQLMREFTAQGYSI+MISSELPEVVGM+DRVCVF+GGGIVAT+E Sbjct: 425 FDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIVATLE 484 Query: 481 GAAVTAAEIMTHATSGRLQHAA 502 G AV A EIMTHAT+GR++HAA Sbjct: 485 GEAVNAEEIMTHATTGRIRHAA 506 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust. Identities = 221/497 (44%), Positives = 316/497 (63%), Gaps = 9/497 (1%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 ++ L + K F V L ++ AGEVHAL+GENGAGKSTLMKILSG+ D+G+I + Sbjct: 22 VIALRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILL 81 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLM-RAEMRRRA 119 DG+P QA A G+G++ QE +L+ +L A N+F+ RE R +GL + E+ R+A Sbjct: 82 DGKPVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQA 141 Query: 120 ARIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFR 179 A I A++ +++ PV +L+VA+QQ VEIAKAL+ ++R+L++DEPTA L AE+ LFR Sbjct: 142 AAIFARMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFR 201 Query: 180 VMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRI 239 ++R L+ QGV I++ISH ++E+ +I DR++V+RDG Y+A+ + E ++ MMVGR + Sbjct: 202 IIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRAL 261 Query: 240 --ENCFPPKSATTIAAAAEVVLEVQELQLKRNAPVSRFQLRRGEILGFAGLVGSGRTETV 297 E PP ++ +VVLEV+ L R F LR+GEILGFAGL+G+GRTE Sbjct: 262 DGEQRIPPDTSRN-----DVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVA 316 Query: 298 LAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNN 357 A+ GA P ++ + G PA A+ GIG L E RK GL + NI+L++ Sbjct: 317 RAIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSS 376 Query: 358 YGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVIARWINHHMQ 417 G++ + G F+D+R +A Q +R++ +K P + LSGGNQQK+VIA+W+ Sbjct: 377 MGRFTRVG-FMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCD 435 Query: 418 VLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVA 477 +L FDEPTRGIDVGAK+EIY+L+ QG +I+MISSELPEV+ MS RV V G I Sbjct: 436 ILFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITG 495 Query: 478 TVEGAAVTAAEIMTHAT 494 + A T +IM AT Sbjct: 496 ELARADATQEKIMQLAT 512 Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 15/231 (6%) Query: 17 LRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRIDGQPCRFDSYHQAIAA 76 +R V + GE+ G GAG++ + + + G +AGEI I G S A+A Sbjct: 289 IRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVAH 348 Query: 77 GVGVVFQE---FSLIPYLDAVDNMFLARELRSPLGLLMRAE-MRRRAARIIAQLGV-EIA 131 G+G + ++ F L +D N+ L S +G R M +RA R AQ+ V ++A Sbjct: 349 GIGYLSEDRKHFGLAVGMDVQANIAL-----SSMGRFTRVGFMDQRAIREAAQMYVRQLA 403 Query: 132 LDVPVCK-----LSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVMRGLRE 186 + P + LS QQ + IAK L + IL DEPT + +++++ L E Sbjct: 404 IKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLLDALAE 463 Query: 187 QGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGR 237 QG AI+ IS L E+ + R+ V+ +G A + Q +++++ R Sbjct: 464 QGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEKIMQLATQR 514 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 217/496 (43%), Positives = 315/496 (63%), Gaps = 3/496 (0%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 +LQ+ GI+K+FG L + + + GE+HAL+GENGAGKSTLMK+LSG+ +PD GEI + Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 120 DG+P + AAG+ +++QE ++ P + N+F+ ELR+ LGL+ A MR R Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLGLIDHAAMRSRTD 125 Query: 121 RIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRV 180 ++ QLG +LS+A+QQ VEIA+AL +RI+++DEPTA L+ E E LF V Sbjct: 126 AVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNV 185 Query: 181 MRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIE 240 +R LR++G+AII+ISH + E++ + DR+TVLRDG++V +E+D R+V+MMVGR + Sbjct: 186 VRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLS 245 Query: 241 NCFPPKS-ATTIAAAAEVVLEVQELQLKRNAPVSRFQLRRGEILGFAGLVGSGRTETVLA 299 + + A AA V++V+ L + P S F +R GE+LGFAGLVG+GRTE Sbjct: 246 EFYQHQRIAPADAAQLPTVMQVRALAGGKIRPAS-FDVRAGEVLGFAGLVGAGRTELARL 304 Query: 300 MLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYG 359 + GA P + + G P+ P A++AGI +PE RK QGL + N ++N Sbjct: 305 LFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATMNVAS 364 Query: 360 KYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVIARWINHHMQVL 419 ++ + GL R A +AA++R+ VK V LSGGNQQKV++ARW+ +VL Sbjct: 365 RHTRLGLVRSRSLGGVA-RAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWLEIAPKVL 423 Query: 420 IFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATV 479 I DEPTRG+D+ AK+EIYQL+ +QG ++++ISSELPEV+G+ DRV V + G I + Sbjct: 424 ILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVMREGMITGEL 483 Query: 480 EGAAVTAAEIMTHATS 495 GAA+T IM AT Sbjct: 484 AGAAITQENIMRLATD 499 Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 11/241 (4%) Query: 17 LRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRIDGQPCRFDSYHQAIAA 76 +R V AGEV G GAG++ L ++L G G+I ++G+P D A+ A Sbjct: 275 IRPASFDVRAGEVLGFAGLVGAGRTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRA 334 Query: 77 GVGVVFQE-------FSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAARIIAQLGVE 129 G+ V ++ + +A N+ +R R LGL+ + A I +L V+ Sbjct: 335 GIAYVPEDRKGQGLFLQMAVAANATMNVA-SRHTR--LGLVRSRSLGGVARAAIQRLNVK 391 Query: 130 IAL-DVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVMRGLREQG 188 +A + PV KLS QQ V +A+ L + ++L+LDEPT + +++++ L QG Sbjct: 392 VAHPETPVGKLSGGNQQKVLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQG 451 Query: 189 VAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIENCFPPKSA 248 VA++ IS L E+ ICDR+ V+R+G A + Q ++ + + P + Sbjct: 452 VAVVVISSELPEVIGICDRVLVMREGMITGELAGAAITQENIMRLATDTNVPRTAPASHS 511 Query: 249 T 249 + Sbjct: 512 S 512 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/479 (42%), Positives = 293/479 (61%), Gaps = 13/479 (2%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDAGEIRI 60 +L L+GI K F V L+ V V GEV ALLGENGAGKSTL+KIL+GI PD G I + Sbjct: 35 VLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHL 94 Query: 61 DGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPL-GLLMRAEMRR-- 117 G+ RF S A+ G+ V QE + L +N+++ R+ PL G R + RR Sbjct: 95 GGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQ---PLCGTPRRIDWRRME 151 Query: 118 -RAARIIAQLGVEIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEH 176 A + A+L V++ + V LSVAQ+ FVEIA+AL+ +A+++++DEPTA L+ E+ Sbjct: 152 DEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGE 211 Query: 177 LFRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVG 236 L+R++ LR G A+IFISH +EI+ + DR TVLRDG ++AS + ++ + +LV +MVG Sbjct: 212 LYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVG 271 Query: 237 RRIENCFPPKSATTIAAAAEVVLEVQELQLKRNAPVSRFQLRRGEILGFAGLVGSGRTET 296 R + F ++A+ VLEV+ L F +R GEILGF GLVG+GR+E Sbjct: 272 REVGQVF-SRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAGRSEV 330 Query: 297 VLAMLGAHPALRCKLSMRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLN 356 + A+ G P + + + G ++ PAQA+ G+ +PE R+ QG + S PI NI+L Sbjct: 331 MHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQNITLP 390 Query: 357 NYGKYRKGGLFL--DRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVIARWINH 414 G FL RRRE + ++ +KA H V LSGGNQQKVV+A+W+ Sbjct: 391 VLPGI---GFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAKWLAT 447 Query: 415 HMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGG 473 +VLI DEPT+GID+G+KA +++ + E AQG ++I++SSELPEV+GMSDR+ V G Sbjct: 448 QPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVMHQG 506 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 201/485 (41%), Positives = 301/485 (62%), Gaps = 18/485 (3%) Query: 1 MLQLTGIKKNFGPVTVLRGVDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPDA--GEI 58 +L++ GI K+FG V L G+D+K+ GE L GENGAGKSTLMKILSG+ GEI Sbjct: 5 LLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEI 64 Query: 59 RIDGQPCRFDSYHQAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRR 118 DG+P + S AAG+ ++ QE L+P L +N+F+ E+ P G + M RR Sbjct: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRR 124 Query: 119 AARIIAQLGV-EIALDVPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHL 177 A ++ +L + +I + +PV + QQ VEIAKAL +AR+L+LDEP+++LT +E+ L Sbjct: 125 AEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVL 184 Query: 178 FRVMRGLREQGVAIIFISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGR 237 ++++ L+ +GVA ++ISH L+E+ E+CD I+V+RDG ++A+ + E+D +++ MVGR Sbjct: 185 LKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQMVGR 244 Query: 238 RIENCFPPKSATTIAAAAEVVLEVQELQL--------KRNAPVSRFQLRRGEILGFAGLV 289 I +P ++ A EVVLE + + KR VS F +RRGEILG AGLV Sbjct: 245 EITAMYPERN----HAIGEVVLEARNITCYDIDNPRRKRVDDVS-FSVRRGEILGIAGLV 299 Query: 290 GSGRTETVLAMLGAHPA-LRCKLSMRGVPLRFADPAQALQAGIGLLPESRKEQGLITSFP 348 G+GRTE V A+ GA+ ++ + G P + P ++++ G+ ++PE RK G++ Sbjct: 300 GAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGLCMVPEDRKHHGIVPDLD 359 Query: 349 ILHNISLNNYGKYRKGGLFLDRRREAQATQAAMRRVGVKAPDAHARVDTLSGGNQQKVVI 408 + NI+L ++ +G +D E + Q + R+ VK + +LSGGNQQK V+ Sbjct: 360 VGQNITLTVLNRFSRGS-RIDGSAELKTIQDEIGRMRVKTATPFLPITSLSGGNQQKAVL 418 Query: 409 ARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVC 468 A+ + +VLI DEPTRG+DVGAKAEIY+L+ E G +IIM+SSEL EV+G+SDRV Sbjct: 419 AKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIMVSSELAEVLGVSDRVL 478 Query: 469 VFKGG 473 V G Sbjct: 479 VIGEG 483 Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 6/235 (2%) Query: 20 VDMKVCAGEVHALLGENGAGKSTLMKILSGIVSPD-AGEIRIDGQPCRFDSYHQAIAAGV 78 V V GE+ + G GAG++ L+ + G G++ ++G+P S ++I G+ Sbjct: 283 VSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKPADTSSPLKSIRRGL 342 Query: 79 GVVFQE---FSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAARI-IAQLGVEIALD- 133 +V ++ ++P LD N+ L R G + + + I ++ V+ A Sbjct: 343 CMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPF 402 Query: 134 VPVCKLSVAQQQFVEIAKALALEARILVLDEPTATLTPAEVEHLFRVMRGLREQGVAIIF 193 +P+ LS QQ +AK L + ++L+LDEPT + ++R++ L + G+AII Sbjct: 403 LPITSLSGGNQQKAVLAKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIM 462 Query: 194 ISHHLEEIFEICDRITVLRDGAYVASCAVNEVDQARLVEMMVGRRIENCFPPKSA 248 +S L E+ + DR+ V+ +G + + Q ++ + + + P +A Sbjct: 463 VSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAINQPVPQATPRAAA 517 Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 17/225 (7%) Query: 275 FQLRRGEILGFAGLVGSGRTETVLAMLGAHP--ALRCKLSMRGVPLRFADPAQALQAGIG 332 ++R GE +G G G+G++ + + G +P ++ G PL+ AGI Sbjct: 26 IKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEILWDGKPLQAHSVRDTEAAGIV 85 Query: 333 LLPESRKEQGLITSFPILHNISLNNY-----GKYRKGGLFLDRRREAQATQAAMRRVGVK 387 ++ +E L+ + NI + + G+ ++ RR E + M + V Sbjct: 86 II---HQELMLVPELSVAENIFMGHEITLPGGRMNYPAMY--RRAEELMRELNMPDINVA 140 Query: 388 APDAHARVDTLSGGNQQKVVIARWINHHMQVLIFDEPTRGIDVGAKAEIYQLMREFTAQG 447 P V GG+QQ V IA+ +N ++LI DEP+ + + +++++ A+G Sbjct: 141 LP-----VSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIGVLLKIIKDLKARG 195 Query: 448 YSIIMISSELPEVVGMSDRVCVFKGGGIVATVEGAAVTAAEIMTH 492 + + IS +L EV + D + V + G +AT + +I+T Sbjct: 196 VACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIITQ 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,421,111 Number of extensions: 57452 Number of successful extensions: 864 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 546 Number of HSP's successfully gapped: 193 Length of query: 502 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 413 Effective length of database: 1,198,455 Effective search space: 494961915 Effective search space used: 494961915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)