BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0849.p
         (287 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310388|ref|YP_003774480.1| hypothetical protein Hsero_1055...   472   e-134

>gi|300310388|ref|YP_003774480.1| hypothetical protein Hsero_1055
           [Herbaspirillum seropedicae SmR1]
          Length = 283

 Score =  472 bits (1214), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/277 (87%), Positives = 251/277 (90%), Gaps = 3/277 (1%)

Query: 11  APALLLSGQVMHQRLRPVVHKFVYPVFCVRLDLARLAEANNAWFGVDRRRLMCVRTRDYG 70
           APALLLSGQVMHQRLRPV+HKFVYPVFCVRLDLARLAEA NAWFGVDRRRLMCVRTRDYG
Sbjct: 10  APALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLAEAGNAWFGVDRRRLMCVRTRDYG 69

Query: 71  PRDGSDLSRWVRTHLQQAGLPQDGAIWLQTFPRLFGFVFNPVSFFLCHDREGALRAVLAE 130
           PR+GSDL +WVR HLQQAGLP DGAIWLQTFPRLFGFVFNPVSFFLCHDREG LRAVLAE
Sbjct: 70  PRNGSDLMQWVRGHLQQAGLPDDGAIWLQTFPRLFGFVFNPVSFFLCHDREGRLRAVLAE 129

Query: 131 VNNTFGQTQHYLLCAPDQGAIGEHTRLVCNKLMHVSPFCEVRGFYRFRFRDQVRRDATRA 190
           VNNTFG+TQHYLL AP QG I EHTRLVC+KLMHVSPFCEVRGFYRFRFRDQ RR     
Sbjct: 130 VNNTFGETQHYLLSAPGQGVIDEHTRLVCDKLMHVSPFCEVRGFYRFRFRDQPRRGQADQ 189

Query: 191 DTAFVGIDYYDHGHPAEAMQPQQPQQPLIRTAIGGHLHPLTAASAFAALCAQPLLTLGVV 250
            TAFVGIDYYDHG PAE +   Q  QPL+RT+IGGHL PLTAASAFAALCAQPLLTLGVV
Sbjct: 190 HTAFVGIDYYDHGQPAEVL---QGLQPLMRTSIGGHLQPLTAASAFAALCAQPLLTLGVV 246

Query: 251 ARIHWQALLLWRKRVPWFSKPARAAAAGTTSGKETLS 287
           ARIHWQALLLWRKRVPWFSKP RAAAAG T+GKETLS
Sbjct: 247 ARIHWQALLLWRKRVPWFSKPERAAAAGPTTGKETLS 283


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 925,430
Number of extensions: 37250
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,222,130
Effective search space: 248092390
Effective search space used: 248092390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)