BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0840.p
         (425 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046...   845   0.0  
gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...    58   2e-09

>gi|300310379|ref|YP_003774471.1| hypothetical protein Hsero_1046
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/425 (95%), Positives = 414/425 (97%)

Query: 1   MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDNEQLKGHGLTFTIGRGNE 60
           MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDN  LKGHGLTFTIGRGNE
Sbjct: 1   MTKITALRVLDVRFPTSQSLDGSDAMNPDPDYSAAYVILDTDNAALKGHGLTFTIGRGNE 60

Query: 61  ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW 120
           ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW
Sbjct: 61  ICCAAIRAMEHLVVGLELEWIAADMGRFWRHVTSDSQLRWIGPDKGAIHLATGAVVNAAW 120

Query: 121 DLWAKAQGKPVWKLVADMSPEELVRTIDFRYITDCITPEEALALLREKEAGKAERLRILE 180
           DLWAKA+GKPVWKLVADMSPEELVRTIDFRYITDCITP+EALALLREKEAGKAERLR+LE
Sbjct: 121 DLWAKAEGKPVWKLVADMSPEELVRTIDFRYITDCITPDEALALLREKEAGKAERLRVLE 180

Query: 181 QEGYPCYTTSAGWLGYDDAKLRRLCQQAIDQGFNHVKLKVGRDLEDDKRRVRIAREVLGP 240
           QEGYPCYTTSAGWLGY+DAKLRRLCQ+AIDQGFNHVKLKVGRDL DDKRRV IAREVLGP
Sbjct: 181 QEGYPCYTTSAGWLGYEDAKLRRLCQEAIDQGFNHVKLKVGRDLADDKRRVTIAREVLGP 240

Query: 241 DRSLMIDANQVWEVDQAIAWVNELAFAQPWFIEEPTCPDDVEGHRKIRAGIGAVKVATGE 300
           +R LMIDANQVWEV QAI WVN+LAFAQPWFIEEPT PDDVEGHRKIR GIGAVKVATGE
Sbjct: 241 ERKLMIDANQVWEVHQAIDWVNQLAFAQPWFIEEPTSPDDVEGHRKIREGIGAVKVATGE 300

Query: 301 MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKYGKVVCPHAGGVGLCEYV 360
           MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKYGKVVCPHAGGVGLCEYV
Sbjct: 301 MCQNRVLFKQFIMRDAIDVVQIDSCRLGGVNEILAVMLMAAKYGKVVCPHAGGVGLCEYV 360

Query: 361 QHLSMIDYLCISGSKEGRVTEYVDHLHEHFVDPCVIRNAAYMPPSLPGFSIEMKPASLEQ 420
           QHLSMIDYLCISGSKEGRVTEYVDHLHEHFVDPCV++NAAYMPPS PGFSIEMKP SLEQ
Sbjct: 361 QHLSMIDYLCISGSKEGRVTEYVDHLHEHFVDPCVVKNAAYMPPSRPGFSIEMKPQSLEQ 420

Query: 421 YRFRG 425
           YRFRG
Sbjct: 421 YRFRG 425


>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 211 QGFNHVKLKVGRDLE----DDKRRVRIA-----REVLGPDRSLMIDANQVWEVDQAIAWV 261
           +GF  VK+    +L+     DK  + +A     RE +GP+  + +D +       A A +
Sbjct: 138 RGFTAVKMNGTEELQFIDSHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKALI 197

Query: 262 NELAFAQPWFIEEPTCPDDVEGHRKIRAGIGAVKVATGEMCQNRVLFKQFIMRDAIDVVQ 321
            EL   +  FIEEP   ++ E  ++I A + +  +A GE   +R  FK+ +    +D++Q
Sbjct: 198 KELEPYKLMFIEEPVLSENAEALKEI-AHLTSTPIALGERLYSRWDFKRILSEGYVDIIQ 256

Query: 322 IDSCRLGGVNEILAVMLMAAKYGKVVCPH 350
            D    GG+ E   + +MA  Y   +  H
Sbjct: 257 PDVSHAGGITETRKIAMMAEAYDVALALH 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,365,410
Number of extensions: 56650
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,203,190
Effective search space: 405475030
Effective search space used: 405475030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)