BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0838.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillu...   520   e-149
gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillu...   151   6e-38

>gi|300310377|ref|YP_003774469.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 246/292 (84%), Positives = 267/292 (91%), Gaps = 1/292 (0%)

Query: 1   MNAQLLVDGHHELGEGVLWCERSQSLFWTDIHASRLWNHDPHSGATRSWSMPERLCCFAF 60
           MN QLLVDGHHELGEGVLWC+RSQS+FWTDIHASRLWNHDP +G TRSW MPERLCC+AF
Sbjct: 1   MNVQLLVDGHHELGEGVLWCDRSQSVFWTDIHASRLWNHDPQTGLTRSWGMPERLCCYAF 60

Query: 61  TADPERLLIGLESRLAFFNLNTAAITPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDA 120
           TADP++LLIGLESRLAFFNL+T  I PICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDA
Sbjct: 61  TADPQQLLIGLESRLAFFNLSTGTIAPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDA 120

Query: 121 SREPIASFYRLNADLSLERLALPGIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDPASG 180
            R PIASFYRLN DL+LERL+LP IAISNSICFSLDGKLMYHCDSMAGKIMVCDYD ASG
Sbjct: 121 GRAPIASFYRLNTDLTLERLSLPSIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDTASG 180

Query: 181 AVSGQRVFADLAQQPGGPDGSTVDAEGYVWNAQWGGSRVVRFAPDGVIDRIIDLPTAQPS 240
           AV GQRVFAD+A QPGGPDGST+DAEGY+WNAQWGG+RVVR+APDG IDR++ +PT+QPS
Sbjct: 181 AVGGQRVFADVA-QPGGPDGSTIDAEGYLWNAQWGGARVVRYAPDGRIDRVVAIPTSQPS 239

Query: 241 CVAFGGAALDTLFVTTAHEGMSAQQRAQDALAGAVFAVPQVGVRGLPEVRFA 292
           CVAFGGA  DTL+VTTAHEGMSA+QRA D  AGA+FAV    VRGLPEVRFA
Sbjct: 240 CVAFGGAQFDTLYVTTAHEGMSAEQRAADPQAGALFAVALADVRGLPEVRFA 291


>gi|300313173|ref|YP_003777265.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 302

 Score =  151 bits (382), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 142/286 (49%), Gaps = 13/286 (4%)

Query: 13  LGEGVLWCERSQSLFWTDIHASRLWNHDPHSGATRSWSMPERLCCFAFTADPERLLIGLE 72
           LGE  LW  +  +L+W DI    +    P SG  + W +PE        A    L++ + 
Sbjct: 21  LGESPLWHAQEAALYWIDIPGKAVHRLHPESGQHKRWDLPEEPGSIVRHAQ-GGLVVAIR 79

Query: 73  SRLAFFNLNTAAITPICRIEDDLPSTRLNDGRCDRQGRFVFGTLNEDASREPIASF-YRL 131
           + +   N +T A+T +     D    R NDGRCD  GRF  GT+ E   R+    + +  
Sbjct: 80  TGMFHLNTDTGALTLLLAAPYDSSRIRFNDGRCDASGRFWCGTIYEPRDRDGGTLYCFER 139

Query: 132 NADLSLERLALPGIAISNSICFSLDGKLMYHCDSMAGKIMVCDYDPASGAVSGQRVFADL 191
           NA     R A   +  SN + FS D +LMYH ++ A +I + DYD A+GA S  R+    
Sbjct: 140 NA----LRDAHHAVVTSNGLAFSSDQRLMYHANTPAHRINLYDYDLATGATSNCRLLRQF 195

Query: 192 AQQP------GGPDGSTVDAEGYVWNAQWGGSRVVRFAPDGVIDRIIDLPTAQPSCVAFG 245
                     G PDG+ VD++G  W A + G RV+R +P G I + I LP   P+ VAFG
Sbjct: 196 DSDKSAPDYGGRPDGAAVDSQGAYWCAMFEGGRVLRLSPQGEILQEIRLPARCPTMVAFG 255

Query: 246 GAALDTLFVTTAHEGMSAQQRAQDALAGAVFAVPQVGVRGLPEVRF 291
           G  L TL++TT   G S  + AQ   +G V AV +V V G  E  +
Sbjct: 256 GDDLRTLYITTGRNGRSPAELAQYPESGCVLAV-RVDVPGQLEYSY 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,389
Number of extensions: 45342
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)