BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0821.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310361|ref|YP_003774453.1| major facilitator superfamily p...   570   e-164
gi|300313979|ref|YP_003778071.1| major facilitator superfamily p...   114   2e-26

>gi|300310361|ref|YP_003774453.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  570 bits (1469), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 343/378 (90%), Positives = 359/378 (94%), Gaps = 2/378 (0%)

Query: 14  HRIRNATRATMAQFFVNGATFATWGVLIPSVKERFDLSDAVLSLAMLAVAGGALLTMGQS 73
           HRIRNATRATMAQFFVNGATFATWGVLIPSVKERF LSDAVLSLAMLAVAGGALLTMGQS
Sbjct: 14  HRIRNATRATMAQFFVNGATFATWGVLIPSVKERFALSDAVLSLAMLAVAGGALLTMGQS 73

Query: 74  GKWIARVGSARALRQVGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFDVAMSVQAAL 133
           GKWIARVGSARALRQVGILYAATLLLIPLAPQFWMLV LLLVFGSAMAAFDVAMSVQAAL
Sbjct: 74  GKWIARVGSARALRQVGILYAATLLLIPLAPQFWMLVLLLLVFGSAMAAFDVAMSVQAAL 133

Query: 134 VEGRRTRPIMSTLHAMFSIGGIAGSALGAVPGLSPLAHAALVAAMTLAVALSIGPFALPD 193
           VEG+RTRPIMSTLHAMFSIGGIAG+ALGAVPGLSPLAHAALV  +TLAV+LSIGPFALPD
Sbjct: 134 VEGQRTRPIMSTLHAMFSIGGIAGAALGAVPGLSPLAHAALVGVVTLAVSLSIGPFALPD 193

Query: 194 DTHDDTSATPEG-DHSARRMVLVLGVIAFLALMCEGGMYDWAAVYMRDIAQSPVAWVSYS 252
           + HD ++ATP G D  ARRMVLVLG IAFLALMCEGGMYDWAAVYMRD+AQSP+AWVSYS
Sbjct: 194 EVHD-SAATPHGADKRARRMVLVLGGIAFLALMCEGGMYDWAAVYMRDVAQSPMAWVSYS 252

Query: 253 YAAFSTGMALGRLTGDRIRERIGGLRTLAWSGVAGATGIALAAAWPSPLATMAGLLLAGL 312
           YAAFSTGMA GRLTGDRIR RIGGLRTLAWSG AGA GIALAAAWPSPLAT+ GLLL+GL
Sbjct: 253 YAAFSTGMAAGRLTGDRIRARIGGLRTLAWSGAAGAAGIALAAAWPSPLATLGGLLLSGL 312

Query: 313 GIANLMPIFFLAAARVPGMAAAQSIAAVARFAYVGMLLGPVCIGGVAEHLGLRVSFVGVS 372
           GIANLMPIFFLAAARVPGMAAA+SIAAVARFAYVGMLLGPV IGGVAEHLGLR+SFVGV+
Sbjct: 313 GIANLMPIFFLAAARVPGMAAAESIAAVARFAYVGMLLGPVFIGGVAEHLGLRLSFVGVA 372

Query: 373 LVMMMVALFGPRAVRRFI 390
           LVM +VALFG +AVRRFI
Sbjct: 373 LVMTVVALFGGKAVRRFI 390


>gi|300313979|ref|YP_003778071.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 400

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 174/345 (50%), Gaps = 19/345 (5%)

Query: 27  FFVNGATFATWGVLIPSVKERFDLSDAVLSLAMLAVAGGALLTMGQSGKWIARVGSARAL 86
           F + G  F+TW   IP+++++  L  A L+L +L    GA+ +   +       G+  + 
Sbjct: 41  FLLLGVVFSTWAARIPAIRDQLQLDAATLALVLLCGGIGAVGSFPLAAWITGHYGARHSS 100

Query: 87  RQVGILYAATLLLIPLAPQFWMLVALLLVFGSAMAAFDVAMSVQAALVEGRRTRPIMSTL 146
              G++   +L L+ LAP  W L+A+  ++G+A + FDVA++   A  E    RPIMS L
Sbjct: 101 LYAGLVLLLSLPLLALAPGLWTLMAVCTLYGAASSCFDVAINALGAQAEREAGRPIMSML 160

Query: 147 HAMFSIGGIAGSAL-GAVPGL--SPLAHAALVAAMTLAVALSIGPFALPDD--THDDTS- 200
           H  F +G  +G+ +  AV GL  +PL H   +AA  LA  L  G  ALPDD   +D    
Sbjct: 161 HGWFCVGTFSGALVASAVAGLGVAPLWHFL-LAAALLAWPLYAGCQALPDDRPQYDPQRQ 219

Query: 201 --ATPEGDHSARRMVLVLGVIAFLALMCEGGMYDWAAVYMRDIAQSPVAWVSYSYAAFST 258
             A P G       ++VLGVIAF   + EG + DW+ +YM+D   +       +YAAF+ 
Sbjct: 220 LFALPHGH------LVVLGVIAFCGAIVEGSVADWSGIYMKDHIGASDGATPLAYAAFAG 273

Query: 259 GMALGRLTGDRIRERIGGLRTLAWSGVAGATGIALAAAWPSPLATMAGLLLAGLGIANLM 318
            M + R+ GD ++ R    R ++   +    G+ALA         + G  +AG G+A + 
Sbjct: 274 MMLVMRMVGDGLKARYDARRVVSIGTLVATGGMALAVTAQGMTPAILGFAIAGAGVAAVF 333

Query: 319 PIFFLAAARVPGMAAAQSIAAVARFAYVGMLLGPVCIGGVAEHLG 363
           P  F AA R      + ++AAVA   Y G L+GP   G +A   G
Sbjct: 334 PFVFSAAGR----HGSTALAAVATLGYSGSLIGPPVFGFLAHGWG 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 982,831
Number of extensions: 34597
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)