BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0818.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310358|ref|YP_003774450.1| methionine aminopeptidase [Herb...   529   e-151
gi|300311492|ref|YP_003775584.1| methionine aminopeptidase [Herb...   309   1e-85

>gi|300310358|ref|YP_003774450.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  529 bits (1362), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/265 (95%), Positives = 259/265 (97%)

Query: 1   MRKVKLRSAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVNVQKATPAN 60
           MRKVKLR+AAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIV VQKATPAN
Sbjct: 1   MRKVKLRNAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVQVQKATPAN 60

Query: 61  IGYHGFPKTICSSVNEVICHGIPGPQVLKDGDIINIDVAVIKDGWYGDCSRMYLVGSPNA 120
           IGYHGFPKTICSSVNEVICHGIPG QVLKDGDIINIDVAVIKDGWYGDCSRMY VGSPNA
Sbjct: 61  IGYHGFPKTICSSVNEVICHGIPGGQVLKDGDIINIDVAVIKDGWYGDCSRMYFVGSPNA 120

Query: 121 TARKLVNTTYEAMCAGIRAVRPGATLGDVGHAIQTVAQRDGFSVVREYCGHGIGTVYHDE 180
           TARKLVNTTYEAMCAGIRAVRPGATLGDVGHAIQTVAQRDGFSVVREYCGHGIGTVYHDE
Sbjct: 121 TARKLVNTTYEAMCAGIRAVRPGATLGDVGHAIQTVAQRDGFSVVREYCGHGIGTVYHDE 180

Query: 181 PQVLHYGQRNAGLPLKEGMIFTIEPMLNAGKRHTRQLDDGWTVLTADGSLSAQWEHMVVV 240
           PQVLHYGQRNAGLPLKEGMIFTIEPMLNAGKRHT QLDDGWTV+TADGSLSAQWEHMVVV
Sbjct: 181 PQVLHYGQRNAGLPLKEGMIFTIEPMLNAGKRHTEQLDDGWTVVTADGSLSAQWEHMVVV 240

Query: 241 TAKGYEILTPWPEKFGDYPTIATRS 265
           T+KGYEILTPWP+ FGDYP IATR+
Sbjct: 241 TSKGYEILTPWPDGFGDYPAIATRN 265


>gi|300311492|ref|YP_003775584.1| methionine aminopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  309 bits (792), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 142/257 (55%), Positives = 192/257 (74%), Gaps = 5/257 (1%)

Query: 1   MRKVKLRSAAEIAQARVAGQLAAEVLHIVAEHVKAGVTTDELDRICHDHIVNVQKATPAN 60
           M  + +++A +I   RVAG+LAAEVL  +   VK GVTT E+DR+CH+++ NVQ + PA 
Sbjct: 1   MGNITIKTAEDIEGMRVAGRLAAEVLDYITPFVKPGVTTGEIDRLCHEYMTNVQGSIPAP 60

Query: 61  I-----GYHGFPKTICSSVNEVICHGIPGPQVLKDGDIINIDVAVIKDGWYGDCSRMYLV 115
           +     GY  +PK IC+S+N+VICHGIPG +V+K+GD++NIDV +IKDG++GD SRM+ +
Sbjct: 61  LNYCPPGYTPYPKAICTSLNDVICHGIPGDKVMKNGDVLNIDVTIIKDGYHGDTSRMFFL 120

Query: 116 GSPNATARKLVNTTYEAMCAGIRAVRPGATLGDVGHAIQTVAQRDGFSVVREYCGHGIGT 175
           G P+  AR+L   TYE M  GI  ++PGA LGD+GH IQ  A++ G+SVVRE+CGHGIG 
Sbjct: 121 GEPSILARRLTEITYECMWLGISKIKPGAHLGDIGHVIQQHAEKAGYSVVREFCGHGIGK 180

Query: 176 VYHDEPQVLHYGQRNAGLPLKEGMIFTIEPMLNAGKRHTRQLDDGWTVLTADGSLSAQWE 235
           V+H+EPQVLHYG+      L+ GMIFT+EPM+NAG+R  R++ DGWT+ T D SLSAQWE
Sbjct: 181 VFHEEPQVLHYGRPGTLEKLEAGMIFTVEPMINAGRREIREMGDGWTIKTKDRSLSAQWE 240

Query: 236 HMVVVTAKGYEILTPWP 252
           H V+VT  G+E+LT  P
Sbjct: 241 HTVLVTETGFEVLTVSP 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,824
Number of extensions: 37721
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)