BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0810.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310350|ref|YP_003774442.1| sugar ABC transporter ATPase [H... 948 0.0 gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [H... 340 2e-94 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 327 2e-90 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 325 6e-90 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 312 5e-86 >gi|300310350|ref|YP_003774442.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/520 (90%), Positives = 496/520 (95%), Gaps = 1/520 (0%) Query: 1 MTSQTTSK-PPALAQEFLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLI 59 MTSQTTS A AQEFLRLQG+HKRFAGVHALRG+DLTIHAGEIYHLLGENGCGKSTLI Sbjct: 1 MTSQTTSSVSAAPAQEFLRLQGIHKRFAGVHALRGVDLTIHAGEIYHLLGENGCGKSTLI 60 Query: 60 KIIAGAQPPSEGEIYIQGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLV 119 KIIAGAQPPSEGEIYIQG+RV +LTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLV Sbjct: 61 KIIAGAQPPSEGEIYIQGQRVAELTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLV 120 Query: 120 RHQGRLARLFDRSALNDTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSA 179 HQGRLARLFDR ALN TA RALRAVNLPA A+FLDTRVDELPIATRQLIAIARAIATSA Sbjct: 121 HHQGRLARLFDRHALNQTAARALRAVNLPADADFLDTRVDELPIATRQLIAIARAIATSA 180 Query: 180 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 239 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV Sbjct: 181 RMVIMDEPTTSLTQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKV 240 Query: 240 AQGPIQEFTKARLGQLMTGKQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGE 299 AQGPIQ+FTKA+LGQLMTGKQLS+ERYRVDAQLHK +EVRAL R GAFEDVSFALR+GE Sbjct: 241 AQGPIQQFTKAQLGQLMTGKQLSQERYRVDAQLHKPLMEVRALGRHGAFEDVSFALRQGE 300 Query: 300 ILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRISE 359 ILGITGLLDSGRNELALALAGV PA+ GQI L+G+ L L+ PGDAITHGIGYVPEDRISE Sbjct: 301 ILGITGLLDSGRNELALALAGVEPARAGQITLEGQPLSLRNPGDAITHGIGYVPEDRISE 360 Query: 360 GLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSVDTVRQLQIATPDVERPVQSLSGG 419 GLFLDKSIRDNI+TTILRK+RGKFGALDAAAC+RFS DTVRQLQIATPDV+RPVQSLSGG Sbjct: 361 GLFLDKSIRDNIVTTILRKLRGKFGALDAAACQRFSTDTVRQLQIATPDVDRPVQSLSGG 420 Query: 420 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPELL 479 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLA++G+GVILISDDLPELL Sbjct: 421 NQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLAQRGLGVILISDDLPELL 480 Query: 480 QNCDNLLLMKRGRIVRRFEVEGLSESDLSHDLVSEQSQEN 519 QNCDNLLLMKRGRIVRR+ VEGL+ES+L HDLVSEQSQE+ Sbjct: 481 QNCDNLLLMKRGRIVRRYAVEGLAESELFHDLVSEQSQES 520 >gi|300313728|ref|YP_003777820.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 546 Score = 340 bits (872), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 197/494 (39%), Positives = 287/494 (58%), Gaps = 30/494 (6%) Query: 17 LRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYIQ 76 L L G+ KRF GV AL+ + T+ GE+ LLGENG GKSTL+KI+ G P EG I++ Sbjct: 36 LSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLG 95 Query: 77 GERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSALND 136 G V + ++ GI V+Q+ + +SVAEN+ + Q + R D + D Sbjct: 96 GREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPL---CGTPRRIDWRRMED 152 Query: 137 TAGRALRA---VNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQ 193 A RAL A V+LP A RV +L +A R + IARA++ A++VIMDEPT +L+ Sbjct: 153 EA-RALFARLEVDLPVRA-----RVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSH 206 Query: 194 KEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKARLG 253 E+ L ++I LR G AV+F+SHK DE +A+ + V RDG +A G + + T+ +L Sbjct: 207 HEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLV 266 Query: 254 QLMTGKQLSEERYRVDAQLHKTR---LEVRALTRAGAFEDVSFALREGEILGITGLLDSG 310 LM G+++ + R + LEV+ L+ F+DVSFA+R GEILG GL+ +G Sbjct: 267 ALMVGREVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAG 326 Query: 311 RNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRISEGLFLDKSIRDN 370 R+E+ AL G++P G + +DGR +KL +P AI HG+ YVPEDR +G L I N Sbjct: 327 RSEVMHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQN 386 Query: 371 I-------ITTILRKMRGKFGALDAAACERFSVDTVRQLQIATPDVERPVQSLSGGNQQR 423 I I LR+ R + + CE QL++ + V LSGGNQQ+ Sbjct: 387 ITLPVLPGIGFFLRRHRRREIDIARRLCE--------QLELKASHFHQHVAQLSGGNQQK 438 Query: 424 VLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPELLQNCD 483 V++ +WLA PRVLIL PT G+D+GSK ++R I +L QG+ VIL+S +LPE++ D Sbjct: 439 VVLAKWLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSD 498 Query: 484 NLLLMKRGRIVRRF 497 +++M +GR+ + F Sbjct: 499 RIVVMHQGRVQQVF 512 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 5/221 (2%) Query: 287 AFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAIT 346 A +DV F +R GE++ + G +G++ L L G+ G I L GR ++ + DA+ Sbjct: 50 ALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLGGREVRFASAQDAMR 109 Query: 347 HGIGYVPEDRISEGLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSVDTVRQLQIAT 406 GI V ++ + +F + S+ +NI + + G +D E + +L++ Sbjct: 110 GGITAVHQETV---MFEELSVAENIWIG-RQPLCGTPRRIDWRRMEDEARALFARLEVDL 165 Query: 407 PDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGM 466 P V V+ LS + V I R L+ +V+I+ PT + +YRII L R G Sbjct: 166 P-VRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGELYRIIGQLRRAGT 224 Query: 467 GVILISDDLPELLQNCDNLLLMKRGRIVRRFEVEGLSESDL 507 VI IS E+ D +++ GR + E+ ++E L Sbjct: 225 AVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQL 265 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 327 bits (837), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 195/490 (39%), Positives = 286/490 (58%), Gaps = 28/490 (5%) Query: 16 FLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYI 75 L+++G+ K F AL + LTI GEI+ L+GENG GKSTL+K+++G P +GEI + Sbjct: 6 LLQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILL 65 Query: 76 QGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRSALN 135 G V P AS + GI +YQ+L++ PN+SVA NV + +L G L D +A+ Sbjct: 66 DGRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSELRTRLG----LIDHAAMR 121 Query: 136 DTAGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKE 195 LR + A L R L IA +Q + IARA+ +R+VIMDEPT +L+++E Sbjct: 122 SRTDAVLRQLGAGFGASDLAGR---LSIAEQQQVEIARALVHRSRIVIMDEPTAALSERE 178 Query: 196 VDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKARLGQL 255 + L V+ LR G+A++++SH++ E +A+ + V RDG V + E R+ Q+ Sbjct: 179 TEQLFNVVRRLRDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQM 238 Query: 256 MTGKQLSE--ERYRV---DAQLHKTRLEVRALTRAGAFEDVSFALREGEILGITGLLDSG 310 M G+ LSE + R+ DA T ++VRAL G SF +R GE+LG GL+ +G Sbjct: 239 MVGRSLSEFYQHQRIAPADAAQLPTVMQVRALA-GGKIRPASFDVRAGEVLGFAGLVGAG 297 Query: 311 RNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRISEGLFLDKSIRDN 370 R ELA L G P G I+L+GR + + P A+ GI YVPEDR +GLFL ++ N Sbjct: 298 RTELARLLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAAN 357 Query: 371 IITTILRK------MRGK-FGALDAAACERFSVDTVRQLQIATPDVERPVQSLSGGNQQR 423 + + +R + G + AA +R +V ++A P E PV LSGGNQQ+ Sbjct: 358 ATMNVASRHTRLGLVRSRSLGGVARAAIQRLNV------KVAHP--ETPVGKLSGGNQQK 409 Query: 424 VLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPELLQNCD 483 VL+ RWL I P+VLIL PT GVD+ +K IY+++ LA QG+ V++IS +LPE++ CD Sbjct: 410 VLLARWLEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICD 469 Query: 484 NLLLMKRGRI 493 +L+M+ G I Sbjct: 470 RVLVMREGMI 479 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 325 bits (833), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 184/477 (38%), Positives = 284/477 (59%), Gaps = 10/477 (2%) Query: 19 LQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYIQGE 78 L+ V KRF GV AL + AGE++ L+GENG GKSTL+KI++G G+I + G+ Sbjct: 25 LRNVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGK 84 Query: 79 RVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLF-DRSALNDT 137 VE P + +LGI ++Q+L+L+ ++S A+N+ + + + G LF D LN Sbjct: 85 PVEITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMG----LFIDEDELNRQ 140 Query: 138 AGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKEVD 197 A + L T V EL +A +Q++ IA+A++ +R++IMDEPT +L E+ Sbjct: 141 AAAIFARMRLDMDPS---TPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIA 197 Query: 198 ALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKARLGQLMT 257 L ++I L+A GV ++++SHK+DE I + V RDG+ +A P+QE + + +M Sbjct: 198 ELFRIIRDLQAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMV 257 Query: 258 GKQLS-EERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREGEILGITGLLDSGRNELAL 316 G+ L E+R D + LEVR L R A DVSF LR+GEILG GL+ +GR E+A Sbjct: 258 GRALDGEQRIPPDTSRNDVVLEVRGLNRGRAIRDVSFTLRKGEILGFAGLMGAGRTEVAR 317 Query: 317 ALAGVAPAQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRISEGLFLDKSIRDNIITTIL 376 A+ G P + G+I++ G +++P DA+ HGIGY+ EDR GL + ++ NI + + Sbjct: 318 AIFGADPLEAGEIIIHGGKAVIKSPADAVAHGIGYLSEDRKHFGLAVGMDVQANIALSSM 377 Query: 377 RKMRGKFGALDAAACERFSVDTVRQLQIATPDVERPVQSLSGGNQQRVLIGRWLAINPRV 436 + + G +D A + VRQL I TP VE+ + LSGGNQQ+++I +WL + + Sbjct: 378 GRFT-RVGFMDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWLLRDCDI 436 Query: 437 LILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPELLQNCDNLLLMKRGRI 493 L PT G+DVG+K IY+++ LA QG +++IS +LPE+L+ +L+M GRI Sbjct: 437 LFFDEPTRGIDVGAKSEIYKLLDALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRI 493 Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 7/209 (3%) Query: 287 AFEDVSFALREGEILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAIT 346 A ++ F L GE+ + G +G++ L L+GV +G I+LDG+ +++ P A Sbjct: 37 ALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPVEITEPRQAQA 96 Query: 347 HGIGYVPEDRISEGLFLDKSIRDNI-ITTILRKMRGKFGALDAAACERFSVDTVRQLQIA 405 GIG + ++ L S NI I RK G F +D R + ++++ Sbjct: 97 LGIGIIHQEL---NLMNHLSAAQNIFIGREPRKAMGLF--IDEDELNRQAAAIFARMRLD 151 Query: 406 TPDVERPVQSLSGGNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQG 465 D PV L+ QQ V I + L+ + RVLI+ PT ++ ++RII+DL QG Sbjct: 152 M-DPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDLQAQG 210 Query: 466 MGVILISDDLPELLQNCDNLLLMKRGRIV 494 +G++ IS + EL Q D + +M+ G+ + Sbjct: 211 VGIVYISHKMDELRQIADRVSVMRDGKYI 239 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 16/237 (6%) Query: 31 ALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGEIYIQGERVEQLTPLASLS 90 A+R + T+ GEI G G G++ + + I GA P GEI I G + +P +++ Sbjct: 288 AIRDVSFTLRKGEILGFAGLMGAGRTEVARAIFGADPLEAGEIIIHGGKAVIKSPADAVA 347 Query: 91 LGIETVYQD---LSLLPNMSVAENVALSEQLVRHQGRLAR--LFDRSALNDTAGRALR-- 143 GI + +D L M V N+ALS GR R D+ A+ + A +R Sbjct: 348 HGIGYLSEDRKHFGLAVGMDVQANIALSSM-----GRFTRVGFMDQRAIREAAQMYVRQL 402 Query: 144 AVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSLTQKEVDALVKVI 203 A+ P+ ++ + L +Q I IA+ + ++ DEPT + + K++ Sbjct: 403 AIKTPS----VEQQARLLSGGNQQKIVIAKWLLRDCDILFFDEPTRGIDVGAKSEIYKLL 458 Query: 204 NGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKARLGQLMTGKQ 260 + L G A++ +S +L E + + +V +G + + T+ ++ QL T ++ Sbjct: 459 DALAEQGKAIVMISSELPEVLRMSHRVLVMCEGRITGELARADATQEKIMQLATQRE 515 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 312 bits (799), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 181/494 (36%), Positives = 279/494 (56%), Gaps = 24/494 (4%) Query: 13 AQEFLRLQGVHKRFAGVHALRGIDLTIHAGEIYHLLGENGCGKSTLIKIIAGAQPPSEGE 72 A+ L L G+HK FAGV AL + L + GE++ L+G+NG GKSTLIK++ G P G+ Sbjct: 9 ARPMLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGK 68 Query: 73 IYIQGERVEQLTPLASLSLGIETVYQDLSLLPNMSVAENVALSEQLVRHQGRLARLFDRS 132 I + G + + L + +LGI TVYQ+++L PN+SVAEN+ + R+ R R+ +S Sbjct: 69 IELDGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVG----RYPTRFGRIDWKS 124 Query: 133 ALNDT-AGRALRAVNLPASAEFLDTRVDELPIATRQLIAIARAIATSARMVIMDEPTTSL 191 + +++ +A P+A +Q++AI+RA++ SA+++I+DEPT+SL Sbjct: 125 VHTQSRQLLQQLQIDIDVAAPL-----SSYPLAIQQMVAISRALSVSAKVLILDEPTSSL 179 Query: 192 TQKEVDALVKVINGLRANGVAVLFVSHKLDECFAIGGQAIVFRDGEKVAQGPIQEFTKAR 251 + EV L KV+ LR G+A+LFV+H LD+ + I + V R+G + + + E ++ Sbjct: 180 DEAEVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLD 239 Query: 252 LGQLMTG-------------KQLSEERYRVDAQLHKTRLEVRALTRAGAFEDVSFALREG 298 L M G + L+ E A L+ R G LR G Sbjct: 240 LVNKMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEGFGRRGVLAPQDLQLRRG 299 Query: 299 EILGITGLLDSGRNELALALAGVAPAQTGQIVLDGRTLKLQTPGDAITHGIGYVPEDRIS 358 E+ G+ GLL SGR E+A L G A GQ+ ++G+ ++L P DAI GIG+ EDR Sbjct: 300 EVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLNVPRDAIAAGIGFCSEDRKK 359 Query: 359 EGLFLDKSIRDNIITTILRKMRGKFGALDAAACERFSVDTVRQLQIATPDVERPVQSLSG 418 EG L+ S+R+NII L+ +G F L + + D V+ L I T D+E P+ LSG Sbjct: 360 EGAILELSVRENIILA-LQARQGLFRVLPRKRQNQIAADYVKWLGIKTADLETPIGLLSG 418 Query: 419 GNQQRVLIGRWLAINPRVLILHGPTVGVDVGSKDIIYRIIQDLARQGMGVILISDDLPEL 478 GNQQ+ L+ RWLA +P +LIL PT G+DV +K I + + R+GM ++ IS ++PE+ Sbjct: 419 GNQQKALLARWLATDPGMLILDEPTRGIDVRAKQEIMDFVIAMCRKGMSILFISSEIPEV 478 Query: 479 LQNCDNLLLMKRGR 492 L+ D +L+++ R Sbjct: 479 LRCSDRMLVLRDRR 492 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,559,555 Number of extensions: 67894 Number of successful extensions: 861 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 589 Number of HSP's successfully gapped: 206 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)