BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0806.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310344|ref|YP_003774436.1| fumarylacetoacetate hydrolase f...   536   e-154

>gi|300310344|ref|YP_003774436.1| fumarylacetoacetate hydrolase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score =  536 bits (1382), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/324 (79%), Positives = 288/324 (88%)

Query: 1   MKLATYHDGTPDGSLVLVSRDQRSALPVPQIAATLIDAMARWDQVQGALAERYEALNAGR 60
           MKLAT  DG+ DG+L+LVSRDQR A+PVPQIAA+L+DA+ RWDQVQ  L ERYEALN G 
Sbjct: 1   MKLATLPDGSLDGALLLVSRDQRHAVPVPQIAASLLDAVQRWDQVQPLLQERYEALNQGG 60

Query: 61  ADGSIGFDVQRCMAPLPRAPQWLDASAFLNHGRLMEQAFNTPPIPHFDTVPVMYQGASDD 120
              +I FD ++C+APLPR+PQWLDASAFLNHGRLME+AF TPPIPHFDTVPVMYQGASDD
Sbjct: 61  LTEAIAFDPRQCIAPLPRSPQWLDASAFLNHGRLMEEAFKTPPIPHFDTVPVMYQGASDD 120

Query: 121 FLGPYQDVPLCSEQEGIDFEGEFGVVVGPVAMGATPEQALQAVRLVVQINDWSLRALGPH 180
           FLGPYQDV L SE++GIDFEGEFGV+VGPV MG    QALQAVRL+VQINDWSLRALGPH
Sbjct: 121 FLGPYQDVALPSEEDGIDFEGEFGVIVGPVPMGVQASQALQAVRLLVQINDWSLRALGPH 180

Query: 181 EMKTGFGFLQAKPSTAFAPIAVTPDELGDAWREGRVAMRLHVQWNGERFGEPHGGEMNFS 240
           EMKTGFGFLQAKPSTAFAP+AVTPDELG AWR+GRV MRL VQWNG+ FG PHGGEMNFS
Sbjct: 181 EMKTGFGFLQAKPSTAFAPMAVTPDELGPAWRDGRVQMRLQVQWNGQPFGHPHGGEMNFS 240

Query: 241 FGQLVAHAAHSRRLTAGCIIGSGTVSNVARTAGSACIAERRVIEKIDQGEIRTGFMHFGD 300
           FG+L+AHAA SRRLTAG +IGSGTVSN +R AGSACIAERRVIEKID G+IRTGFM FGD
Sbjct: 241 FGELIAHAARSRRLTAGTVIGSGTVSNQSRAAGSACIAERRVIEKIDHGDIRTGFMRFGD 300

Query: 301 EVRMEAHYDDGRAGPFGVLQQRVV 324
           EV M+A +DDGR+GPFG+LQQRVV
Sbjct: 301 EVSMQACFDDGRSGPFGLLQQRVV 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,148,832
Number of extensions: 50500
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)