BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0803.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310341|ref|YP_003774433.1| major facilitator superfamily p...   520   e-149

>gi|300310341|ref|YP_003774433.1| major facilitator superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 310/385 (80%), Positives = 339/385 (88%), Gaps = 2/385 (0%)

Query: 1   MITTYSKRALAALMLAHCAGMIDMVALPVWVGALVAYYSFNPQQAGLLVSLFLGGAVLAS 60
           MIT+YSKR LAALMLAHCAGMID+VALPVWVG LVAYY F+ +QAGLL SLFLGGAVLAS
Sbjct: 1   MITSYSKRGLAALMLAHCAGMIDLVALPVWVGTLVAYYHFDARQAGLLASLFLGGAVLAS 60

Query: 61  AMVAPRFDPRTSRLRATLGFSMSAILFVLAAQTHSLLLLALLHAGCGMTTGLSLSVTHGT 120
           AM+APRFDP T+R +A +GF++SA+LF +AAQTH  LLLALLHA CG+TTGLSLSVTHGT
Sbjct: 61  AMLAPRFDPETARWKAAIGFALSALLFTVAAQTHHYLLLALLHAVCGITTGLSLSVTHGT 120

Query: 121 IARGVNPHRGFALVGMALGVFAIVFLGGSPVIIASQGGQALFYIFGAVMAVGALACALAF 180
           IARG NPHRGFALVG+ALGVFAI+FLG +P ++A  GG  LFY+F  VMAVGALA ALAF
Sbjct: 121 IARGSNPHRGFALVGIALGVFAILFLGSAPPLVAHLGGSTLFYLFAGVMAVGALASALAF 180

Query: 181 PLPETEGILPR-SGPRESMPRVVWFGIAGIACMGLVQSMIFSFLERVGMDRGFGHAALTG 239
           P  ET+G LPR S  R  +PR VW+GIAGIACMGLVQSM FSFLERVG DRGFG  A+TG
Sbjct: 181 PRAETDG-LPRVSTVRPPVPRQVWYGIAGIACMGLVQSMTFSFLERVGSDRGFGLQAVTG 239

Query: 240 VLIALGFVNLLPAPLAALLEKRLSARSVLMVGPLVQAMLAALMMSSTRFAPYAVAASVFA 299
           VLIALGFVNLLPAPLAALLEKRL AR+VLM GPLVQA+L  ++MSS RFAPYA AASVFA
Sbjct: 240 VLIALGFVNLLPAPLAALLEKRLPARNVLMAGPLVQALLVLVIMSSARFAPYAAAASVFA 299

Query: 300 AVMIFTHTFAFGLMARLDRSGRALAATPAMLMTGAAIGPILGGTLVQGWGYACLGSVAIA 359
           AVMIFTHTFAFGLMARLDRSGRA+AATPAMLMTGAAIGPILGGTLVQGWGY  LG VA+A
Sbjct: 300 AVMIFTHTFAFGLMARLDRSGRAMAATPAMLMTGAAIGPILGGTLVQGWGYGSLGPVALA 359

Query: 360 LGLTASFCFSRLPRGAAVQSQEALA 384
           LGLTASFCFSRLPR AAVQ QEALA
Sbjct: 360 LGLTASFCFSRLPRAAAVQPQEALA 384


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,085,648
Number of extensions: 44802
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)