BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0802.p (376 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-me... 699 0.0 gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding prote... 95 1e-20 gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [He... 73 4e-14 >gi|300310340|ref|YP_003774432.1| FAD-dependent 2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/376 (91%), Positives = 360/376 (95%) Query: 1 MTLAAQRILIIGGGFSGTSAAIELRRLGAQVDLVELDAQWRNYGAGISLGPATLRALKQL 60 MTLAAQRILIIGGGFSG SAAI+LRR GAQVDLVELDAQWRNYGAGISLGPATLRALKQL Sbjct: 1 MTLAAQRILIIGGGFSGMSAAIDLRRRGAQVDLVELDAQWRNYGAGISLGPATLRALKQL 60 Query: 61 GVLDAFLREGAAGDGVQLCLPHGPQVAVLPTPRLAAPDVPGGGAILRPVLARILADATRA 120 GVL+AFLREGAAGDGV+LCLPHGPQVA LPTPRLA+PDVPGGGAILRPVLARILADATRA Sbjct: 61 GVLEAFLREGAAGDGVRLCLPHGPQVAELPTPRLASPDVPGGGAILRPVLARILADATRA 120 Query: 121 AGTDVRLGCTFTALREVGDEVEVDFTDGQTRRYDLVIGADGLYSKLRAQIFPNAPKPRYS 180 AG DVRLGCTF+A+REVG +VEVDFTDGQTRRYDLVIGADGLYSKLR +FP+APKPRYS Sbjct: 121 AGADVRLGCTFSAVREVGHKVEVDFTDGQTRRYDLVIGADGLYSKLRMHLFPHAPKPRYS 180 Query: 181 GQAVWRAVLPRPAEITTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNDHVDPASFVER 240 GQAVWRAVLPRP EI TCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVN+HVDP +FV Sbjct: 181 GQAVWRAVLPRPQEIVTCTMWMGPRIKPGVNPVSKDEMYLFVTEPRPVNEHVDPTTFVSH 240 Query: 241 LRGLLADFSAPVLKTIRDQLDDNARIIFRPLEGMLLPRPWYQGRVVLIGDAVHATTPHLA 300 LRGLL +FSAPVLKTIR+QLDDNARIIFRPLEG+LLPRPWYQGRVVLIGDAVHATTPHLA Sbjct: 241 LRGLLEEFSAPVLKTIREQLDDNARIIFRPLEGLLLPRPWYQGRVVLIGDAVHATTPHLA 300 Query: 301 SGACIGIEDALVLADELARNGTVPLALSAFEERRWERCRMVVENSARLGEIEVEGGDKDE 360 SGACIGIEDALVLADEL R+GTVP AL+AFEERRWERCRMVVENSARLGEIEVEGGDKDE Sbjct: 301 SGACIGIEDALVLADELERHGTVPQALAAFEERRWERCRMVVENSARLGEIEVEGGDKDE 360 Query: 361 HSRIMRESHAALVQPI 376 HSRIMR SHAALVQPI Sbjct: 361 HSRIMRASHAALVQPI 376 >gi|300310665|ref|YP_003774757.1| monooxygenase FAD-binding protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/301 (29%), Positives = 136/301 (45%), Gaps = 23/301 (7%) Query: 28 GAQVDLVELDAQWRNYGAGISLGPATLRALKQLGVLDAFLREGAAGD-GVQLCLPHGPQV 86 G V + E + GAGI +GP ++ L+++G+ D R+G+ D G + Sbjct: 27 GFNVRVYEQAPGFSRLGAGIHVGPNVMKVLRRIGIEDEMNRQGSRPDFWYSRHWQTGDVL 86 Query: 87 AVLPTPRLAAPDVPGGG-AILRPVLARILADATRAAGTDVRLGCTFTALREVGDEVEVDF 145 A +P A + R +L A + G T + + GD V + F Sbjct: 87 AQIPLGDYAVKHYGASYLTVHRGDFHELLIKAL--PSERLSFGKCLTKVEDRGDVVILSF 144 Query: 146 TDGQTRRYDLVIGADGLYSKLRAQIFPNAPKPRYSGQAVWRAVLPRPA------EITTCT 199 DG T D+VIGADG+ S++R ++ P P+Y+G RAV P P C Sbjct: 145 ADGTTEEADIVIGADGVNSRIREELLGVEP-PKYAGYLAHRAVFPTPELKAGMLPFDACV 203 Query: 200 MWMGPRIKPGVNPVSK--DEMYLFVT----EPRPVNDHVDPASFVERLRGLLADFSAPVL 253 W V V+ +E+Y +VT E +ND P+S E +R + P + Sbjct: 204 KWWSDDRHMMVYFVTSKANELY-YVTGVPVEKWDLNDRWLPSS-KEEMRETFHGWH-PTV 260 Query: 254 KTIRDQLDDNARIIFRPLEGMLLPRPWYQGRVVLIGDAVHATTPHLASGACIGIEDALVL 313 + + D + + + LE LP W +GR+VL+GDA H PH+A GA + IED +L Sbjct: 261 QALVDATVEVTK--WSLLERDPLPL-WSRGRLVLLGDACHPMKPHMAQGAAMAIEDGAML 317 Query: 314 A 314 A Sbjct: 318 A 318 >gi|300312379|ref|YP_003776471.1| FAD-dependent monooxygenase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 101/362 (27%), Positives = 149/362 (41%), Gaps = 37/362 (10%) Query: 7 RILIIGGGFSGTSAAIELRRLGAQVDLVELDAQWRNYGAGISLGPATLRALKQLGVLDAF 66 + I G G +G + A+ L+R G +V L+E Q G+G+ L P L L+ LG+ F Sbjct: 5 HVAIAGAGPAGLAMALYLKRAGHRVSLLERFLQAAPVGSGLILQPTGLTVLQDLGL---F 61 Query: 67 LREGAAGDGVQLCLPHGPQVAVLPTPRLAAPDVPGGG----AILRPVLARILADATRAAG 122 R A G + +G T D GG A+ R L +L +A + G Sbjct: 62 SRIAALGQRIDRL--YGADALSGKTVLDVRYDAIAGGRYGIAVHRAALFGVLLEAAQQEG 119 Query: 123 TDVRLGCTFTALREVGDEVEVDFTDGQTRR---YDLVIGADGLYSKLRAQIFPNA-PKPR 178 +V G L G + + DG RR +DLVI A G S LR + P+P Sbjct: 120 IEVETGQDIGNLEHTGAQACLTAADG--RRIGGFDLVIDASGARSPLRRHALHSCEPRPL 177 Query: 179 YSGQAVWRAVLPRPA----------EITTCTMWMGPRIKPGVNPVSKDE-MYLFVTEPRP 227 G A W ++ +P + +G + P P +DE M F RP Sbjct: 178 PYG-AFWVSLRAQPGLSFGHNSLVQRYRRASTMIG--VLPIGRPTPQDEPMVAFFWSTRP 234 Query: 228 VN-DHVDPASFVERLRGLLADF--SAPVLKTIRDQLDDNARIIFRPLEGMLLPRPWYQGR 284 + + A G+ A + AP L Q+D ++ LP P Y R Sbjct: 235 DRVESLKQAGLSAWKDGVHALWPECAPYLA----QIDGFEQMTLARYGHHTLPLP-YGER 289 Query: 285 VVLIGDAVHATTPHLASGACIGIEDALVLADELARNGTVPLALSAFEERRWERCRMVVEN 344 + +IGDA H+T+P L GA + + DA L+ L ++ T+ AL + R R Sbjct: 290 LAIIGDAAHSTSPQLGQGANMALLDARALSHALQQSETLEQALPRYAASRRRHVRTFQAM 349 Query: 345 SA 346 SA Sbjct: 350 SA 351 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,374,312 Number of extensions: 66274 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 4 Length of query: 376 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 289 Effective length of database: 1,207,925 Effective search space: 349090325 Effective search space used: 349090325 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)