BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0801.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containi...   201   1e-53
gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin su...    58   1e-10

>gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  201 bits (511), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 103/112 (91%)

Query: 1   MYLCHVTQLPEGGARGFDTEGAGQATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYLDA 60
           MYLCH+TQLPE GARGFDTE AGQATIF+LRRGDQVRAWRD CPHHGTPLPWRRDAY D 
Sbjct: 1   MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60

Query: 61  SGEHVVCAAHGALFDPLTGVCTLGPCLGDTLTAVPLRIDGDGGLHIADGNPI 112
           +G+H+VCAAHGALFDPLTGVCTLGPC GDTLTAVPLRID DGGLH+  G+P+
Sbjct: 61  TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL 112


>gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 1   MYLCHVTQLPEGG-ARGFDTEGAG-QATIFLLRRGDQVRAWRDICPHHGTPLPWRRDAYL 58
           + +C   +L EGG  + F  +  G +A+ F++R G  V  + + C H    L W    + 
Sbjct: 7   ILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDWAEGEFF 66

Query: 59  DASGEHVVCAAHGALFDPLTGVCTLGPCLGDTLTAV 94
           ++SG +++CA HGA++ P TG C  GPC G  L  +
Sbjct: 67  ESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKI 102


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.145    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 456,102
Number of extensions: 19995
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)