BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0800.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310338|ref|YP_003774430.1| glyoxalase II protein [Herbaspi...   572   e-164

>gi|300310338|ref|YP_003774430.1| glyoxalase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  572 bits (1473), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/296 (93%), Positives = 285/296 (96%)

Query: 1   MNIIGPDALVFGVDDLPACRQYLIDYGLKDAGSDRFEALDGTAVVLRAKDDATLPPAMGT 60
           MNIIGPDALVFGVDDLPACRQYL+DYGLKDAG DRFEALDGTAVVLRAKDDA+LPPAMGT
Sbjct: 1   MNIIGPDALVFGVDDLPACRQYLLDYGLKDAGGDRFEALDGTAVVLRAKDDASLPPAMGT 60

Query: 61  ASLLRETVYGVADVATLDAIETELRRDREVSRRDGVVRSVDDMGFALAFQVTVRRDLALS 120
           ASLLRETVYGVAD ATLDAIETELRRDREVSRRDGVVRSVDDMGFALAFQ+TVRR L L 
Sbjct: 61  ASLLRETVYGVADSATLDAIETELRRDREVSRRDGVVRSVDDMGFALAFQLTVRRPLTLP 120

Query: 121 SERVNGPGDAQRAPNQLGLTPDLQALPRTLSHVVYFVPDAAKAEAFYHRLGFVCTDRFTG 180
           +ERVNGPG AQRAPN+LGL P+L ALPRTLSHVVYFVPDAAKAEAFYHRLGFVCTDRFTG
Sbjct: 121 AERVNGPGHAQRAPNELGLPPELPALPRTLSHVVYFVPDAAKAEAFYHRLGFVCTDRFTG 180

Query: 181 VGPFLRPAGTQDHHTLFMIQTPPFMKGCEHFTFHMGGPTEVLLAGTRFVEKGYQSFWGPG 240
           VGPFLRPAGT DHHTLFMIQTPPFMKGCEHFTFHMGGPTE+LLAGTRFVEKGYQSFWGPG
Sbjct: 181 VGPFLRPAGTLDHHTLFMIQTPPFMKGCEHFTFHMGGPTELLLAGTRFVEKGYQSFWGPG 240

Query: 241 RHHFGSNWFWYFNSPLGCHVEYDADMDLHDEHWAAREVPMGADASQLFLFQYREKW 296
           RH FGSNWFWYFNSPLGCHVEYDADMDLHD+ WAAREVPMGADASQLFLFQYREKW
Sbjct: 241 RHRFGSNWFWYFNSPLGCHVEYDADMDLHDQSWAAREVPMGADASQLFLFQYREKW 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 965,030
Number of extensions: 40357
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)