BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0798.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003...   506   e-144
gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway...    91   1e-19

>gi|300310336|ref|YP_003774428.1| hypothetical protein Hsero_1003
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/308 (79%), Positives = 277/308 (89%), Gaps = 3/308 (0%)

Query: 1   VKRGYVPARRLAACAVMTMLSAASMKSALAFESGVSPFPAGSTSEYIAALPPMPGVFAVE 60
           +KRG+VPA RLA CA++TM   A+  +A AFE GVSPF  GSTSEYIAALPP+PG+FAVE
Sbjct: 1   MKRGFVPACRLATCALLTM---AAGPAAYAFEGGVSPFLTGSTSEYIAALPPIPGLFAVE 57

Query: 61  QFNYSSSNGLYDNHGNKLPIPFKSDAFSSTTRLLASYGVEFLGAKVYSQLVLPVVSLHTE 120
           QFNYSSSNGLYDN+GNKLPIPFKS A+S+TTRLLASYGV++LGAKVYSQLVLPVVSLHTE
Sbjct: 58  QFNYSSSNGLYDNNGNKLPIPFKSSAYSATTRLLASYGVQWLGAKVYSQLVLPVVSLHTE 117

Query: 121 VFGHGENHNGLSNVTVTPLLLRWDVAPNTNVTWGFDFALKTGSYNPARTSVAVGYNSYQP 180
           V GH E HNGLSNVT TP+LLRWDVA +TNVT+GFD +L+TGSY+P R SVAVGY S+QP
Sbjct: 118 VAGHSETHNGLSNVTATPVLLRWDVAAHTNVTFGFDISLETGSYSPTRPSVAVGYTSWQP 177

Query: 181 VLAIRHNDPDGLDLGISNRVLFNDKNSDTNYRSGSAYVADFIGGWNFGKWKVGVTGAYLN 240
           VLA+RHN+PDGLDLGISNR+L ND+NS TNYRSG+AYVADFIGGWN GKWK GVTG+YLN
Sbjct: 178 VLAVRHNNPDGLDLGISNRLLINDRNSSTNYRSGTAYVADFIGGWNVGKWKFGVTGSYLN 237

Query: 241 QFTDDRQNGNTITGNRARSFAMGPMVSYNAGTYSINMNYQRGLYAANTAKNDAIWLNFAM 300
           QFTDDRQNG  ITGNRARS ++GP V+YNAG +SINMNYQRGLYAANTAK+DAIW+NFAM
Sbjct: 238 QFTDDRQNGADITGNRARSLSLGPTVAYNAGPFSINMNYQRGLYAANTAKSDAIWINFAM 297

Query: 301 PLWLGGPH 308
           PLW+GG H
Sbjct: 298 PLWMGGGH 305


>gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of
           phenol degradation protein [Herbaspirillum seropedicae
           SmR1]
          Length = 316

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 119/285 (41%), Gaps = 14/285 (4%)

Query: 28  ALAFESGVSPFPAGSTSEYIAALPPMP--GVFAVEQFNYSSSNGLYDNHGNKLPIPFKSD 85
           A A E G +  P G T      LPP    G   V    YS+S  L D  G  +P  F  D
Sbjct: 32  AQAVEQGATITPIGITDFGAGMLPPSSPFGTVGVRASYYSAST-LKDGAGKSIPNDFHID 90

Query: 86  AFSSTTRLLASYGVEFLGAKVYSQLVLPVVSLHTEV--------FGHGENHNGLSNVTVT 137
             +          VE LGA+     VLP + +   +               +GL ++ V 
Sbjct: 91  VKTLALAYFYMTDVEVLGARFGVGGVLPFIDISGGLKVGTPAGPLSVSGRDSGLGDMQVL 150

Query: 138 PLLLRWDVAPNTNVTWGFDFALKTGSYNPART-SVAVGYNSYQPVLAIRHNDPDGLDLGI 196
           P +L W + P+  V  G      TG+Y+ ++  +  V + +Y P +   +    GL+L  
Sbjct: 151 PFILAWQLPPSVFVNAGLMIQAPTGAYSTSKAFNAGVNHWTYSPFVGATYITSSGLELST 210

Query: 197 SNRVLFNDKNSDTNYRSGSAYVADFIGGWNFGKWKVGVTGAYLNQFTDDRQNGNTITGNR 256
              +  N  N  T YRSG  Y  +F  G +   W  G+ G    Q +DD   G+   GNR
Sbjct: 211 QVSLNVNTVNPATRYRSGVEYRQEFAIGQHIQSWTAGLAGYVYRQLSDDSGPGSG-DGNR 269

Query: 257 ARSFAMGPMVSY-NAGTYSINMNYQRGLYAANTAKNDAIWLNFAM 300
            R +A+GP VS+   G   + ++  +   A N A+   + L  AM
Sbjct: 270 GRVYALGPAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRLAM 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,325
Number of extensions: 44012
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)