BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0797.p (307 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310335|ref|YP_003774427.1| transcription regulator protein... 536 e-154 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 132 2e-32 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 126 2e-30 gi|300309871|ref|YP_003773963.1| transcription regulator protein... 123 2e-29 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 118 5e-28 >gi|300310335|ref|YP_003774427.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 536 bits (1382), Expect = e-154, Method: Compositional matrix adjust. Identities = 263/302 (87%), Positives = 283/302 (93%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRM 60 MRFNKLDLNLLVALDALLTE++ISRAAEK HLSQSAMSNALARLREYFDD LLIQVGRRM Sbjct: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRM 60 Query: 61 EPTPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAH 120 EPTPRAEVL+DAV+DVLRRI+GSI+A PAFVP +S REFRISVSDF+LSVLIPRV+ARAH Sbjct: 61 EPTPRAEVLKDAVHDVLRRIDGSIAALPAFVPAESTREFRISVSDFTLSVLIPRVLARAH 120 Query: 121 AEGPDIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPL 180 AEG IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDS L Sbjct: 121 AEGKHIRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSAL 180 Query: 181 AEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCMALVQGTD 240 A+GELT ERYMA+GHVVMVPPGA++SSVEAWMA KLG RRVEVTSF+FAS +ALVQGTD Sbjct: 181 AQGELTLERYMASGHVVMVPPGANASSVEAWMARKLGFARRVEVTSFSFASALALVQGTD 240 Query: 241 RIATVHGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLRRVFLESARE 300 RIATVH RLA+ LAPQ PVV+KESPL L EM QMMQWHRYR+NDPGI+WLRRVFLESA+E Sbjct: 241 RIATVHARLAQLLAPQWPVVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLRRVFLESAQE 300 Query: 301 MD 302 MD Sbjct: 301 MD 302 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 11/301 (3%) Query: 3 FNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRMEP 62 FN +DLNLL A+ E +++ A + HLSQ A+S AL RLR+ FDD L I+ M+P Sbjct: 4 FNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQP 63 Query: 63 TPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAHAE 122 TP A L +N L+ ++ ++ F P QS R FR S++D + + +P + A+ Sbjct: 64 TPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQ 123 Query: 123 GPDIRFALMPQVQDPTRSLDRA----EVDLLVLPQEFCTPDHPAEEVFRERHVCVV-WRD 177 PD+R + Q P L+ A ++D P E +FRE +VC++ RD Sbjct: 124 APDVRLQVE---QVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRD 180 Query: 178 SPLAEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCMALVQ 237 +L + ++A HV++ + VE KLG++RR+ ++ +F ++ Sbjct: 181 GLPQRAQLELDEFLAMSHVLVESAESSHHQVENSF-QKLGVQRRISLSIPHFTVLPRILG 239 Query: 238 GTDRIATVHGRLARQLAPQLPVVLKESPLP--LAEMHQMMQWHRYRTNDPGIEWLRRVFL 295 +D +ATV R+AR + P V LP + + + WH+ +D G WLR++ + Sbjct: 240 KSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVI 299 Query: 296 E 296 + Sbjct: 300 D 300 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 14/303 (4%) Query: 1 MRFNKLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRM 60 M F LDLNLL DA++TE N++RAA ++Q A+SNAL RLR+ +D L+I+ + Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 Query: 61 EPTPRAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAH 120 +PTPRAE L V L +E I A +F ++ FR+++ D + ++ +P ++ Sbjct: 61 KPTPRAEELWPTVRRALSELEAVI-APESFDISRAQNTFRMAMVDATAALWLPSLVRTIM 119 Query: 121 AEGPDIRFALMP-QVQDPTRSLDRAEVDLLV--LP---------QEFCTPDHPAEEVFRE 168 + P I+ +MP +DP L R ++DL V P Q ++ Sbjct: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTG 179 Query: 169 RHVCVVWRDSPLAEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFN 228 ++VCV+ + PLA LT + Y A H+++ G + ++ +A + ER++ +T Sbjct: 180 QYVCVMHKSHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAG-MNRERKILLTVNQ 238 Query: 229 FASCMALVQGTDRIATVHGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIE 288 F + +V ++ I + L +V+KE P E H M WH +P + Sbjct: 239 FFTAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHK 298 Query: 289 WLR 291 WLR Sbjct: 299 WLR 301 >gi|300309871|ref|YP_003773963.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 142/293 (48%), Gaps = 9/293 (3%) Query: 7 DLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRMEPTPRA 66 DLNLL+ALDAL+ E +++ AA + LS SAMS L RLRE D LL++ GR+M TP A Sbjct: 23 DLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVLTPCA 82 Query: 67 EVLRDAVNDVLRRIEGSI-SAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAHAEGPD 125 E LR+ V +V+ + + P + R+F I +D + L ++I AE P Sbjct: 83 EALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTAEAPL 142 Query: 126 IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSPLAE-GE 184 +R +P+V+ L DL + P+ + +FR+R V V PLA Sbjct: 143 VRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLAALRR 202 Query: 185 LTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCMALVQGTDRIAT 244 ++ ERY A HV P G + + +A + GL RRV +F +A+V+ +D + Sbjct: 203 VSAERYCAFDHVSASPRGVAAGPLHEALAAR-GLVRRVVAVVPSFPGALAVVRTSDLVTM 261 Query: 245 VHGRL------ARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLR 291 V G R+ + + E PLPL + + WH DP WLR Sbjct: 262 VPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLR 314 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 144/296 (48%), Gaps = 17/296 (5%) Query: 5 KLDLNLLVALDALLTELNISRAAEKTHLSQSAMSNALARLREYFDDALLIQVGRRMEPTP 64 DLNLL A+ E ++S AA K +SQ A+S AL +LR D L ++ GR M+PTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 65 RAEVLRDAVNDVLRRIEGSISAKPAFVPRQSHREFRISVSDFSLSVLIPRVIARAHAEGP 124 RA L ++L+R+ + + F P + + F +++SD +L+PR++ R E P Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 125 DIRFALMPQV-QDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRER-----HVCVVWRDS 178 + + +L+ EVDL + PD F++R VC++ Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAI----GYFPDLRNRNFFQQRLFSQDFVCLLRAGH 178 Query: 179 PLAEGELTRERYMAAGHVVMVPPGAHSSSVEAWMANKLGLERRVEVTSFNFASCMALVQG 238 PL +++ E Y AAGH+V+ G E ++ + + RRV +++ +F + LV Sbjct: 179 PLPAQKISLEHYQAAGHIVVKAEGRDQPMCERFLLRR-KIRRRVVLSTAHFMAIPLLVAT 237 Query: 239 TDRIATV---HGRLARQLAPQLPVVLKESPLPLAEMHQMMQWHRYRTNDPGIEWLR 291 +D +ATV G + A + +V +P+ ++ Q WHR D G WLR Sbjct: 238 SDLVATVPRAFGEFVVRFA-GIRLVEPGFEMPMLDLKQ--HWHRKYHKDAGNAWLR 290 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 925,486 Number of extensions: 37842 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 9 Length of query: 307 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 222 Effective length of database: 1,217,395 Effective search space: 270261690 Effective search space used: 270261690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)