BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0794.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol dehydr...   499   e-143
gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol dehydr...   338   2e-94

>gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  499 bits (1286), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/316 (77%), Positives = 270/316 (85%)

Query: 1   MKVILSRKRSRALRLRKAEIKSPSTPVKRIPLLASVLSVTMLPIAAQAIDVDIGDFVPAP 60
           MK IL      A RL +  + S     +++  LA++  V M P+AA AIDVDIGDFVPAP
Sbjct: 1   MKTILPHCPCPASRLSRIWLNSRMPAARKMLALAALSLVVMFPVAAHAIDVDIGDFVPAP 60

Query: 61  AGTTVGLLYYQHVERTSLYAQGQKAATDPKLDSDIGIARLVHYTTIGGLAFAPQVMVPFG 120
            GTTVGLLYYQH ER SLY +GQKAA +P+L SDIGIARLVHYT+IGGLAFAPQV++PFG
Sbjct: 61  GGTTVGLLYYQHAERDSLYTKGQKAALNPRLVSDIGIARLVHYTSIGGLAFAPQVLLPFG 120

Query: 121 REDAGRDTAALGQTSGVGDIILAAPFWPVNDAASRTYLGIAPYLYLPTGSYDHNRALNLG 180
           R DAGRDTA LGQTSGVGDIILAAPFWP+NDAASRTYLGIAPYLYLPTGSYD NRALNLG
Sbjct: 121 RLDAGRDTAPLGQTSGVGDIILAAPFWPLNDAASRTYLGIAPYLYLPTGSYDRNRALNLG 180

Query: 181 ENRWKFDLQVGFVKGLTDKWYLELTGDGMVYGKNGDYGSSGATQRQKPLFQGQSYLRYQF 240
           E+RWKFDLQVGFVKG T+KWYL+LTGD M YGKN DYGS+GATQRQK LFQGQ+YLRYQF
Sbjct: 181 EHRWKFDLQVGFVKGFTEKWYLDLTGDVMFYGKNNDYGSNGATQRQKSLFQGQAYLRYQF 240

Query: 241 TPAANVFVSLSQTWGGETRINGVDSNDEARERKASIGGSWFILPKTQLLMALGRDLSVEN 300
           TP AN+FV LSQ WGGETR++GV SNDEAR+RKASIGGSWFI PKTQLL A+GRDL V+N
Sbjct: 241 TPVANIFVGLSQNWGGETRVDGVASNDEARQRKASIGGSWFIGPKTQLLGAIGRDLYVQN 300

Query: 301 GFKENARINLRLLHVF 316
           GFKENARINLRLL VF
Sbjct: 301 GFKENARINLRLLRVF 316


>gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  338 bits (868), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/289 (56%), Positives = 207/289 (71%), Gaps = 1/289 (0%)

Query: 29  RIPLLASVLSVTMLPIA-AQAIDVDIGDFVPAPAGTTVGLLYYQHVERTSLYAQGQKAAT 87
           R  L +  +++ M  +A A AIDVD  D+VPAPAGTT GLLY QH ER + Y+ G +   
Sbjct: 15  RTVLFSIAVALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHAERDASYSSGNRNPG 74

Query: 88  DPKLDSDIGIARLVHYTTIGGLAFAPQVMVPFGREDAGRDTAALGQTSGVGDIILAAPFW 147
           +P L SD+ I RLVHY  IGG    PQV++PF    +GRD  ALG  + +GD+ILAAP W
Sbjct: 75  NPLLTSDVTILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALGSENALGDLILAAPVW 134

Query: 148 PVNDAASRTYLGIAPYLYLPTGSYDHNRALNLGENRWKFDLQVGFVKGLTDKWYLELTGD 207
            VND A  T+  +APYLYLPTGSY  +RALN+GENRWKFDLQ G V+ ++   YL+LTGD
Sbjct: 135 LVNDPAKSTFFAVAPYLYLPTGSYSDSRALNVGENRWKFDLQAGLVQRISGPLYLDLTGD 194

Query: 208 GMVYGKNGDYGSSGATQRQKPLFQGQSYLRYQFTPAANVFVSLSQTWGGETRINGVDSND 267
            MV+GKN DYGS   + RQ PL+Q QSYLRYQF+   N    LS+TWGGETR+NGVD++D
Sbjct: 195 VMVFGKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNATAGLSRTWGGETRVNGVDNHD 254

Query: 268 EARERKASIGGSWFILPKTQLLMALGRDLSVENGFKENARINLRLLHVF 316
           +  + K S GGS F+  KTQ++ ++GRDLSV+NGFKEN R+NLRLL +F
Sbjct: 255 QPNQLKISFGGSTFVAAKTQIMGSIGRDLSVDNGFKENFRLNLRLLQIF 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 994,352
Number of extensions: 46071
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)