BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0787.p (345 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 677 0.0 gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 308 6e-85 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 299 2e-82 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 184 1e-47 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 180 1e-46 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/345 (97%), Positives = 343/345 (99%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 MIEIQAVTQRFGNVEAVR VDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL Sbjct: 1 MIEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAQIAAKVEPL 120 DGQDLTSLSA+QLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKA+IAAKVEPL Sbjct: 61 DGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPL 120 Query: 121 LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLR 180 LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSIL+LLR Sbjct: 121 LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLR 180 Query: 181 KINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGDV 240 KIN+ELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVL+VFRQPRHEVTRALIGDV Sbjct: 181 KINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDV 240 Query: 241 IAHELPKGVLARLRERLARADGGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLNFNILHG 300 IAHELPKGVLARLRERLARAD GQGTDHLFRFAFTGNDVDQPHLSEAVRRFNL+FNILHG Sbjct: 241 IAHELPKGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHG 300 Query: 301 QIDEIQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI 345 QIDEIQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI Sbjct: 301 QIDEIQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI 345 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 308 bits (788), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 169/346 (48%), Positives = 238/346 (68%), Gaps = 16/346 (4%) Query: 1 MIEIQAV--TQRFG--NVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSG 56 MI I+ + T R G ++ A+R+++L I +GE+FGIIGRSGAGKSTL+RTLN+L RP SG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 57 RIVLDGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAQIAA 115 R+++DG+D+T L L R+ +GM+FQHFNLL++++V NI PL++ G+ S+ + AA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 116 KVEPLLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSI 175 +V+ LL+LVGL A RD+YP+Q+SGGQKQRVGIARALAN P++LL DEATSALDPETT+SI Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 176 LDLLRKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRA 235 L LL +IN++LGLTIVLITH+MEVI+ ICDRVAV++ G V EQG V+++F +P+H VTR+ Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 236 LIGDVIAHELPKGVLARLRERLARADGGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLNF 295 L+ A + + + R R DG L R + G+ QP LS+ + Sbjct: 241 LLTQSHAWDAGESLYQR------RPDG-----KLVRLTYAGDIAAQPILSQLTAATSALA 289 Query: 296 NILHGQIDEIQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEEL 341 I+ G + I+ +G L + +G D + Q + L+ + E L Sbjct: 290 TIVRGTVSRIKDTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVL 335 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 299 bits (765), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 161/304 (52%), Positives = 212/304 (69%), Gaps = 5/304 (1%) Query: 12 GNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSAS 71 G V+A++++DL I G IFGIIGRSGAGKS+L+RT+N L RPTSGR+ +D DL +L + Sbjct: 53 GPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDET 112 Query: 72 QLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAQIAAKVEPLLELVGLTALRD 131 QL RR IGMIFQHFNLL++++V+DNIALPL +AG +AQI +V LL LVGL D Sbjct: 113 QLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDKAD 172 Query: 132 RYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLLRKINQELGLTIV 191 YP ++SGGQKQRVGIARALA+ P++LL DEATSALDPETT+SIL LLR IN++LG+TI+ Sbjct: 173 SYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGITII 232 Query: 192 LITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGDVIAHELPKGVLA 251 LITH+M VI++I DRV V+E G+V E GEV +VF +P+H TRAL+ + H LP+ + Sbjct: 233 LITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAP-LQHGLPQELQQ 291 Query: 252 RLRERLARADGGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLNFNILHGQIDEIQGQAFG 311 L+ +A G+ + + + F G D QP L +L +D IQG G Sbjct: 292 ALQP---QAPAGR-HERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHG 347 Query: 312 SLAI 315 L + Sbjct: 348 QLVL 351 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 155/242 (64%), Gaps = 3/242 (1%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 MIE++ +++ FG E +++V LS+ +GE+ +IG SG+GKST++R +N L G I++ Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIAL-PLELAGKSKAQIAAKVEP 119 DGQ + + R +GM+FQ FNL R+V +N+ P+ + G ++AQ ++ Sbjct: 61 DGQRVDR-DGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMS 119 Query: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLL 179 LL+ VGL A D YPAQ+SGGQ+QRV IAR+LA P+ +L DE TSALDPE +L ++ Sbjct: 120 LLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVM 179 Query: 180 RKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIGD 239 R + + G+T++++TH+M +++ DRV + +G ++E G +V +P+H T+ + Sbjct: 180 RTLAAD-GMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRR 238 Query: 240 VI 241 VI Sbjct: 239 VI 240 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 147/239 (61%), Gaps = 3/239 (1%) Query: 1 MIEIQAVTQRFGNVEAVRNVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL 60 ++EI +T+RFG+ + + + LS+ +G++ IIGRSG+GKST++R +N L G I + Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 61 DGQDLTSLSASQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAQIAAKVE-P 119 G LT L E R+ +GM+FQH+NL +V +NI L + K+ + A + Sbjct: 63 AGHKLTH-KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 120 LLELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILDLL 179 +L+ VGL RD YP Q+SGGQ+QRV IAR+LA +P+V+L DE TSALDPE T +L ++ Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 180 RKINQELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLEVFRQPRHEVTRALIG 238 ++ + G+T++L+TH+ME +++ D M G+V E E F P+ R IG Sbjct: 182 EELARG-GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 991,667 Number of extensions: 40252 Number of successful extensions: 566 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 148 Length of query: 345 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 259 Effective length of database: 1,212,660 Effective search space: 314078940 Effective search space used: 314078940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)