BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0786.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme... 415 e-117 gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme... 189 2e-49 gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme... 154 4e-39 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 54 8e-09 >gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 415 bits (1067), Expect = e-117, Method: Compositional matrix adjust. Identities = 214/217 (98%), Positives = 216/217 (99%) Query: 1 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVVFNRVAGLLV 60 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITE+KGVLPNV FNR+AGLLV Sbjct: 1 MSSELIDLFVSSFGETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLV 60 Query: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV Sbjct: 61 NAVRSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLV 120 Query: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG Sbjct: 121 EAAQAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYG 180 Query: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR Sbjct: 181 YQRFLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 >gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 199 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 111/199 (55%), Positives = 142/199 (71%) Query: 19 MVVISGVVGSLLGIPLGIALHITESKGVLPNVVFNRVAGLLVNAVRSTPFIILLVAVIPM 78 MV +SG + + G+PL + L ++ G L +RV G ++N R+TPFI+LLVA+IP+ Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 79 TRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLVEAAQAMGATTWQIIYKVL 138 TR GT+IG AAIVPL I+A PF AR+VE +LREVD GLVEAAQA+G W I++ V Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 139 VPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQRFLPEVMLAVVLILIV 198 +PEA GIV G TIT V+L+ SAMAGA+G GGLGDL IRYGYQRF +VM+ V+ +LIV Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180 Query: 199 FVQLVQSLGDLLVRKLSHR 217 V LVQ GD VR+L +R Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199 >gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 229 Score = 154 bits (390), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 112/154 (72%) Query: 64 RSTPFIILLVAVIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLVEAA 123 RS PF+ILL+ +IP T + VGTS+G AI PL I APF ARL E+ LRE+D G++EA Sbjct: 76 RSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEAC 135 Query: 124 QAMGATTWQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQR 183 AMGA QII+ L+PEA G++A +TIT ++L+ Y+AM+G IGGGGLGDL IRYGYQR Sbjct: 136 TAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQR 195 Query: 184 FLPEVMLAVVLILIVFVQLVQSLGDLLVRKLSHR 217 F EVM+ V IL+V VQL+Q GD LV + + + Sbjct: 196 FQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 54.3 bits (129), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 21/197 (10%) Query: 16 TLMMVVISGVVGSLLGIPLGIALHITESKGVLPNVVFNRVAGLLVNAVRSTPFIILLVAV 75 TL M ++ +VG +GI + A + P+ R + VR+TPF++ + + Sbjct: 24 TLKMTTLAVIVGVAIGIFVAFAKNS-------PHRWLARGCSAYIEVVRNTPFLVQIFLL 76 Query: 76 IPMTRFFVGTSIGT-----AAAIVPLTIAAAPFIARLVETALREVDHGLVEAAQAMGATT 130 +F S+G AAA++ + I A + A ++ L V G +EAAQ +G + Sbjct: 77 -----YFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIEAAQCLGLSV 131 Query: 131 WQIIYKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLG--IRYGYQRFLPE- 187 W+I + V++ A + LT F+ ++ SAMA I L + ++ R L Sbjct: 132 WRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTFRSLETY 191 Query: 188 -VMLAVVLILIVFVQLV 203 V+ A+ L+L + V+LV Sbjct: 192 LVVAALYLVLAILVKLV 208 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.143 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 420,167 Number of extensions: 12455 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 9 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)