BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0785.p (265 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310325|ref|YP_003774417.1| metal ion ABC transporter perip... 524 e-150 gi|300314030|ref|YP_003778122.1| metal ion ABC transporter perip... 300 9e-83 gi|300311120|ref|YP_003775212.1| metal ion ABC transporter perip... 271 4e-74 gi|300310887|ref|YP_003774979.1| metal ion ABC transporter perip... 217 7e-58 gi|300311637|ref|YP_003775729.1| metal ion ABC transporter perip... 153 1e-38 >gi|300310325|ref|YP_003774417.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 524 bits (1350), Expect = e-150, Method: Compositional matrix adjust. Identities = 260/265 (98%), Positives = 262/265 (98%) Query: 1 MKRRQLIQFIAGLGLAAGLVCAPAMAEDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKII 60 MKRRQLIQFIAGLGLAAGLV APA A+DQIKMGVTAGPHAEIMEQVKKLLEKDGVQMK+I Sbjct: 1 MKRRQLIQFIAGLGLAAGLVSAPAFAQDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKVI 60 Query: 61 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSL 120 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSL Sbjct: 61 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSL 120 Query: 121 NDLKPGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDA 180 NDLK GARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDA Sbjct: 121 NDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDA 180 Query: 181 AQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKL 240 AQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKL Sbjct: 181 AQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKL 240 Query: 241 VKAYHSPEVKKFVLEKYKGSVITSW 265 VKAYHSPEVKKFVLEKYKGSVITSW Sbjct: 241 VKAYHSPEVKKFVLEKYKGSVITSW 265 >gi|300314030|ref|YP_003778122.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 276 Score = 300 bits (768), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 142/268 (52%), Positives = 197/268 (73%), Gaps = 7/268 (2%) Query: 4 RQLIQFIAGLGLAAGLVCAPAMAEDQIKMGVTAGPHAEIMEQVKKLLEKD--GVQMKIIE 61 R+L + + LA+ ++ A A A+ I++GVT+GPHA+I EQ +++ E+D G ++KIIE Sbjct: 10 RRLSTLMVSM-LASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNPGYKVKIIE 68 Query: 62 FTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLN 121 F DYIQPNAAL AG+LDANSYQH+P+L+AQIK RGYK + G T+ PM +YS+K + L Sbjct: 69 FNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIYSRKYRKLE 128 Query: 122 DLKPGARVGVPNDPTNGGRALLVLQAKGVIKLKAD----AGLKATPLDIVENPKKIKIVE 177 D+ GAR+G+PNDP N R LL+LQ G IKL+A G ATP+DI ENPKK K VE Sbjct: 129 DVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITENPKKWKFVE 188 Query: 178 LDAAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWV 237 +DAAQLPR+LDD DA+ +N +YA AGL+P +D++ VE+ PYA +IAVR D+ +PW+ Sbjct: 189 IDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVREKDRAQPWL 248 Query: 238 AKLVKAYHSPEVKKFVLEKYKGSVITSW 265 KLV+AY SPEVK+++ ++KG ++ +W Sbjct: 249 GKLVQAYQSPEVKRYIETEFKGGILAAW 276 >gi|300311120|ref|YP_003775212.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 271 bits (693), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/265 (54%), Positives = 199/265 (75%), Gaps = 6/265 (2%) Query: 7 IQFIAGLG-LAAGLVCAPAMAEDQ--IKMGVTAGPHAEIMEQVKKLLEKDGVQMKIIEFT 63 I+ +A +G L+ LV A+D+ IK+G++ G I + VKK+ +DG++++ + F+ Sbjct: 10 IKRLAAIGALSLALVPQLGQAQDKQKIKVGISVGSAEAIFDVVKKVAARDGLEIQTVVFS 69 Query: 64 DYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDL 123 DY+QPNAALAAGDLDAN++QH+PYL++QI RGY+ V VG TIT P+G+YS+K +S+ L Sbjct: 70 DYLQPNAALAAGDLDANAFQHRPYLESQIAARGYRIVPVGLTITAPLGIYSRKFRSVEQL 129 Query: 124 KPGARVGVPNDPTNGGRALLVLQAKGVIKLK---ADAGLKATPLDIVENPKKIKIVELDA 180 GA +G+ NDP+NG RALL+LQ G+I+LK + G+ ATPLD++ENP+K+K+VELDA Sbjct: 130 PQGAAIGIQNDPSNGNRALLLLQKAGLIRLKPGVGENGVNATPLDVIENPRKLKLVELDA 189 Query: 181 AQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAKL 240 AQLPRSLDD AA IN +YA AGLS KD IAVE G YAN+IA R DKD+PWV KL Sbjct: 190 AQLPRSLDDLAAASINNDYAFKAGLSLQKDTIAVEDPRGRYANIIATRAEDKDRPWVRKL 249 Query: 241 VKAYHSPEVKKFVLEKYKGSVITSW 265 V+AYHS EV+KF+ ++KGS++ ++ Sbjct: 250 VQAYHSEEVRKFIETEFKGSLVPAF 274 >gi|300310887|ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 217 bits (553), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 114/266 (42%), Positives = 161/266 (60%), Gaps = 4/266 (1%) Query: 1 MKRRQLIQFIAGLGLAAGLVCAPAMAEDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKII 60 M R+ + AG LA A A D++ + T PHAEI+E +K L K+G+ +++ Sbjct: 1 MIRKLIPHLFAGAALA---FSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVK 57 Query: 61 EFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKF-VSVGSTITFPMGVYSKKIKS 119 FTDY+QP A +D N + HQPYLD K V V P YS+K K Sbjct: 58 VFTDYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKK 117 Query: 120 LNDLKPGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELD 179 + D+ GA + +PNDP+N GRALL+L G+IKLK + + AT DIVENPKK+K L+ Sbjct: 118 IADIPNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALE 177 Query: 180 AAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAK 239 AA LPR L+ D A+IN NYA A L+P KD++ +E + PYAN++ R +KD P + K Sbjct: 178 AATLPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKK 237 Query: 240 LVKAYHSPEVKKFVLEKYKGSVITSW 265 L A +SP+VKKF+ EKY+G+++ ++ Sbjct: 238 LAAALNSPDVKKFIEEKYQGAIVPAF 263 >gi|300311637|ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/175 (44%), Positives = 110/175 (62%) Query: 19 LVCAPAMAEDQIKMGVTAGPHAEIMEQVKKLLEKDGVQMKIIEFTDYIQPNAALAAGDLD 78 L A A D++++GV G + + + K ++ G+ ++++EFTD+ PN AL AGDLD Sbjct: 14 LSLQAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEFTDWTTPNVALDAGDLD 73 Query: 79 ANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKSLNDLKPGARVGVPNDPTNG 138 N +QHQP+LD I+ GYK S G+ I +G+YS K KSL L GA+VG+ NDP N Sbjct: 74 LNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTALPQGAKVGIANDPVNQ 133 Query: 139 GRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELDAAQLPRSLDDFDAA 193 GRALL+LQ G+IKLK G + DI++NP+K+ VE++ QL R D D A Sbjct: 134 GRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQLVRITPDVDLA 188 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 719,704 Number of extensions: 27673 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 5 Length of query: 265 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 181 Effective length of database: 1,222,130 Effective search space: 221205530 Effective search space used: 221205530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)