BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0780.p
         (398 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310320|ref|YP_003774412.1| membrane-bound lytic peptidogly...   619   e-178

>gi|300310320|ref|YP_003774412.1| membrane-bound lytic peptidoglycan
           transglycosylase B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score =  619 bits (1595), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 299/376 (79%), Positives = 326/376 (86%), Gaps = 8/376 (2%)

Query: 24  LTSLPATLLLASLCTLPLAAHAQESKPAKAAEKKT-PKKATQKKASPPAKKKVASAEQGE 82
           ++SL   L L +  +   A +A  SK  KA + KT PKK         AKKK +  +QGE
Sbjct: 1   MSSLLLVLGLCASASALCADNAAASKAGKAQQHKTGPKKVV-------AKKKTSPEDQGE 53

Query: 83  FVNFNEWKDVGRFIDEMVERNQFQRSDLNALFAQTRYVDTAIQLIKPAPSNKPKNWTAYR 142
           FVNFNEWK+V RF+D+MVERN F RS+LN+LFAQTRY+D+AIQLIKPAPSNKPKNW AYR
Sbjct: 54  FVNFNEWKEVARFMDDMVERNHFSRSELNSLFAQTRYLDSAIQLIKPAPSNKPKNWFAYR 113

Query: 143 TRFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIVGIIGVETVYGRNTGNFRVMDVL 202
            RFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEII GIIGVETVYGRNTGNFRVMD +
Sbjct: 114 ARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIAGIIGVETVYGRNTGNFRVMDAI 173

Query: 203 TTLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDPMSLRGSYAGAIGWPQFMPGSIR 262
           +TLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDP++LRGSYAGAIGWPQFMPGSIR
Sbjct: 174 STLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDPLTLRGSYAGAIGWPQFMPGSIR 233

Query: 263 EYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGEPVAFPVSVSADNRQWENMLNQG 322
           EYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRG+PVAFPV+VS +NRQWE MLNQG
Sbjct: 234 EYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGQPVAFPVTVSTENRQWEGMLNQG 293

Query: 323 LEAKYSADELHAAGISTPPLPAGMRFGLVDLQNGTGPTEYWIATNNFYAITQYNRSYFYA 382
           LEAKYS DEL AAG+  P +PA +RFGLVDLQNGT PTEYWI T NF+AITQYNRSYFYA
Sbjct: 294 LEAKYSVDELRAAGVVLPAVPADLRFGLVDLQNGTNPTEYWIGTANFFAITQYNRSYFYA 353

Query: 383 MSVADLGHAVAVARNR 398
           MSVA+LG AVA ARNR
Sbjct: 354 MSVAELGRAVAAARNR 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,103,577
Number of extensions: 45257
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,207,925
Effective search space: 375664675
Effective search space used: 375664675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)