BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0778.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985...   630   0.0  

>gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  630 bits (1625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/390 (85%), Positives = 354/390 (90%)

Query: 1   MDAASHHLTRVISHGMGVEPVISDWPALTSAEVARVLRHYPDVGQPLRLEWHSPRPFSAA 60
           MDAASHHLTRVISHGMG +PVISDWPALTSAEVARVLRHYP VGQPLRLEWHSPRPFSAA
Sbjct: 1   MDAASHHLTRVISHGMGADPVISDWPALTSAEVARVLRHYPGVGQPLRLEWHSPRPFSAA 60

Query: 61  CVMQTESGPIIVKRHHARVRDVAALAEEHRFVAHLQARGLPVSTALATTDGATALADEYW 120
           CVMQTESGPIIVKRHH RVRDVAAL EEHRF AHLQ +GLPVS ALAT  GATALAD+YW
Sbjct: 61  CVMQTESGPIIVKRHHVRVRDVAALGEEHRFAAHLQEKGLPVSCALATASGATALADDYW 120

Query: 121 TYEVFPLAPGVDLYREAMSWTPFTSCTHAHSAGQMLARLHQASAGYDAPARPARPLVSSF 180
           TYEVF LA GVDLYREA+SWTPF SC HA SAGQML+RLHQA+AGY+APAR ARPLV+SF
Sbjct: 121 TYEVFALAAGVDLYREALSWTPFHSCAHAWSAGQMLSRLHQAAAGYEAPARAARPLVASF 180

Query: 181 TIFSQEDPVRPLQAYIEARPAIAEYLEGRAWRGEVAQHLLPWHGALKPYLDEFTPLWTHN 240
           TIFSQ+DPV PLQAYI  RPAIA+YLE R WRGEVAQHLLPWH ALKPYLDEF PLWTHN
Sbjct: 181 TIFSQQDPVDPLQAYIAQRPAIADYLEARPWRGEVAQHLLPWHAALKPYLDEFVPLWTHN 240

Query: 241 DWHASNLLWSDATRQAQVRTVLDFGLCDRTCALHDLATAIERNIVEWLSMAQRDTQLVHL 300
           DWHASNLLWSDA+ QAQV+TVLDFGLCDRT ALHDLATAIERNIVEWL++ QRD QLVHL
Sbjct: 241 DWHASNLLWSDASPQAQVQTVLDFGLCDRTTALHDLATAIERNIVEWLAIPQRDEQLVHL 300

Query: 301 DLLDAMLDGYASLLPLSARQMRALAALLPLVHTEFALAELDYFHGVTQSPRNASLAYDTY 360
           DLLDA+LDGYA+  PLSARQ+RALAALLPLVH EFALAELDYFHGVTQS  NASLAYD Y
Sbjct: 301 DLLDALLDGYAAQSPLSARQLRALAALLPLVHAEFALAELDYFHGVTQSAINASLAYDAY 360

Query: 361 FLGHAAWFHDSEGQRLLTHLQRRADALEKN 390
           FLGHAAWFH +EGQRLL HL +RADALE+ 
Sbjct: 361 FLGHAAWFHSAEGQRLLAHLHQRADALEQR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,298,291
Number of extensions: 54387
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)