BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0771.p
         (606 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310312|ref|YP_003774404.1| hypothetical protein Hsero_0979...   723   0.0  

>gi|300310312|ref|YP_003774404.1| hypothetical protein Hsero_0979
           [Herbaspirillum seropedicae SmR1]
          Length = 613

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/619 (68%), Positives = 484/619 (78%), Gaps = 19/619 (3%)

Query: 1   MTMETDLTIMAREALTQLASQYPPRGDSASPPISAPRPAVEQALPEEGVTLSLSAQGKLM 60
           M METDL IMAREA+TQL +Q  PR DSA+    A   A     PEEGVTLSLSAQGKL+
Sbjct: 1   MAMETDLAIMAREAITQLTAQPHPRDDSAAQQGPAAPAATAIPAPEEGVTLSLSAQGKLL 60

Query: 61  AALASAVDNVTTAAVGSTEAVQVLLETVG-GAARPITRNTLFAIEAQLVAARRGADAIAF 119
           AALA+AVD+VT A+ G+  A    L         P+TR  LFA+EAQLVAAR  A+AI  
Sbjct: 61  AALATAVDSVTAASAGAQPAASAALAARSADPTLPVTRKLLFALEAQLVAARGSAEAIQL 120

Query: 120 ADAQLPPSEDAQRLVQARQATDSLYGRAANPFTGLSRAELSAIVYDDSGAYTVNERYAAA 179
           ADA+LPPS++ QRL +ARQAT+SLYGRAANPF GL RAELSAIVYDDSGAYT+NERYAAA
Sbjct: 121 ADAELPPSQEPQRLARARQATESLYGRAANPFAGLGRAELSAIVYDDSGAYTINERYAAA 180

Query: 180 NQRTELDQKFWAPVFQRALDSGDWKPVIAAALVFYASLSTLEQTAYPSNYAQLLQQYLDL 239
           NQRTELDQ+FWAPVFQRAL+SG+W+PVI AALVFY SLS LE+TAYP NY QLLQQYLDL
Sbjct: 181 NQRTELDQRFWAPVFQRALESGNWQPVITAALVFYVSLSALERTAYPDNYPQLLQQYLDL 240

Query: 240 YQWQPQSPLPLQQQADLARMLETLVLPLGPMALAGGVIRGLVLPRLGPSLAELIAAAPRL 299
           Y+ QPQ+ LP  QQADLARMLETLVLP GP+ALAGG I+GL+LPRLGPSLAE++AAAPRL
Sbjct: 241 YRLQPQAVLPAPQQADLARMLETLVLPGGPLALAGGAIQGLLLPRLGPSLAEILAAAPRL 300

Query: 300 ADLVQVNNIAHNVQDSAYLVLLQRVFGLSRREEEPAPLRRA-----GAGALN------RD 348
           ADLVQVNN+AH+VQDS+YL+LLQRVFG+ RRE+EPAP RR      G+G  N      RD
Sbjct: 301 ADLVQVNNLAHSVQDSSYLLLLQRVFGVQRREDEPAPARRTSVPGNGSGVGNMAALAARD 360

Query: 349 FLAYDDRRLLAEAYAYAQTHEMALEEVDALARDLAAYRRARAGAANTRGAAAAAGKDVPG 408
           FL+Y DRR LA AYAYAQ   +A EEVDALA+DLA YR+ RAGA  +  AA AA      
Sbjct: 361 FLSYGDRRYLAAAYAYAQQQGIAPEEVDALAQDLARYRQERAGAGASADAADAARA---- 416

Query: 409 NGLAQTARMSNADAVIAQRLLSSRAASMTQLDHGFLAWLLDPAGGGWRDGELSGHQVSFS 468
             LA T RMS+ D +IAQRLLSS+AA  TQLDH FLAWLLDPAGGGWRDG  SGH VS  
Sbjct: 417 --LAHTTRMSSEDRLIAQRLLSSQAARQTQLDHAFLAWLLDPAGGGWRDGLASGHSVSLG 474

Query: 469 ALEKLLAGLAGVGIGEPAGEGRGLEASYRMALERIVLQDLPVLRQQAQAAAGDAARTLTL 528
            LE+LLAGLAGV +G+ AG    LE +YR+ LERI LQ+    R  +     DAA+ LT 
Sbjct: 475 VLERLLAGLAGVSLGQSAGPAAELEPAYRLVLERIALQEAAANRAASTGVLADAAQELTR 534

Query: 529 AAQMAALARSDAADTAFMNNALMLLRMYRMSLTMSPAEQRTLAELVYCAMKK-RRVRPRR 587
           AAQMAALARSDAA+TAF+NNALMLLRMYR+SLTMSP EQRTLAELVY ++K+ RR R RR
Sbjct: 535 AAQMAALARSDAAETAFLNNALMLLRMYRLSLTMSPVEQRTLAELVYSSLKQRRRPRTRR 594

Query: 588 GKLFLGWAERSPLMPSLPG 606
           GKLFL WAERSPLMPSLPG
Sbjct: 595 GKLFLAWAERSPLMPSLPG 613


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,459,523
Number of extensions: 52163
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,188,985
Effective search space: 612327275
Effective search space used: 612327275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)