BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0770.p
         (196 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone decarbox...   299   1e-82
gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321...   137   5e-34

>gi|300312814|ref|YP_003776906.1| 4-carboxymuconolactone
           decarboxylase domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 191

 Score =  299 bits (765), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/186 (79%), Positives = 156/186 (83%)

Query: 5   QPTRLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDT 64
           +  RLPAI RE M  +Q AMLDAILAGPRKNLNGPFVAWIHSP LGELAQRLGAFCRY+T
Sbjct: 3   KSNRLPAIVREQMTSEQTAMLDAILAGPRKNLNGPFVAWIHSPALGELAQRLGAFCRYET 62

Query: 65  GLPLRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALV 124
           GLPLRLSELAIL TAA WQSQAEW IHLPIA+EAGI P VAEQIR G +P F   DE ++
Sbjct: 63  GLPLRLSELAILATAAAWQSQAEWHIHLPIAVEAGILPDVAEQIRQGATPDFPLEDERVI 122

Query: 125 WRFASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGED 184
           W FA+ELYRDKRVSE TYA A  MFGL VVVNLVGLLGYYALVAMTLN F MRAEGQGE 
Sbjct: 123 WNFANELYRDKRVSERTYAAAVAMFGLPVVVNLVGLLGYYALVAMTLNAFGMRAEGQGEG 182

Query: 185 QLPFAE 190
            LPFAE
Sbjct: 183 DLPFAE 188


>gi|300311636|ref|YP_003775728.1| hypothetical protein Hsero_2321
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  137 bits (345), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 108/183 (59%)

Query: 8   RLPAITREAMRPDQRAMLDAILAGPRKNLNGPFVAWIHSPPLGELAQRLGAFCRYDTGLP 67
           RLP I  E   P+Q+   D  LA  +  + GPF   +HSP +   A+ +G + RY + + 
Sbjct: 24  RLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLMHSPQVMTQARAMGDYLRYHSAIG 83

Query: 68  LRLSELAILTTAACWQSQAEWFIHLPIAIEAGIDPAVAEQIRLGQSPHFVAADEALVWRF 127
             LSEL IL TA  W    EW++H PIAI+AGI P +A  I  G+ P  ++ +E +V+ F
Sbjct: 84  NTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGRRPEGMSEEETIVYDF 143

Query: 128 ASELYRDKRVSETTYAQACEMFGLQVVVNLVGLLGYYALVAMTLNTFAMRAEGQGEDQLP 187
           + EL+R+KRVS+ T+A+A + FG + VV+L G+  YY L+AM +N    +A    +  + 
Sbjct: 144 SIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYYTLLAMQMNAAQYQAPKDAKRLVR 203

Query: 188 FAE 190
           F E
Sbjct: 204 FPE 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 592,348
Number of extensions: 22045
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 196
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 116
Effective length of database: 1,241,070
Effective search space: 143964120
Effective search space used: 143964120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)