BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0769.p (274 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 460 e-131 gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 158 4e-40 gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 157 9e-40 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 122 3e-29 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 460 bits (1184), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/271 (87%), Positives = 252/271 (92%) Query: 1 MRVQLTSVCPSAEVDAFQHLGRAVVAFARELAYRDLLRAHSHRRGQLLYAVEGVMQVRTP 60 MR LTSVCPSAEVD FQHL +VVAFAREL+ RDLL AHSHRRGQLLYAVEGVMQVRTP Sbjct: 1 MRAHLTSVCPSAEVDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTP 60 Query: 61 QGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELI 120 QGVW+VPP RALWVPPQVEHEI MLSKVSMRTLYI + +G+ +G QCRLLEVSVLLRELI Sbjct: 61 QGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELI 120 Query: 121 LALLAEPRDYAPHSRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILADPGRQF 180 LALLAEPRDYAP SRAGHVAELILSEL RAPAIPVAIPWP DRRLQAICEAILADPGRQF Sbjct: 121 LALLAEPRDYAPQSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQF 180 Query: 181 SLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYR 240 SLADWAG+GGASVRTVIRLFP+ETGLQFRHWVQQVHLSEALVRL+RGD VGVVAQALGYR Sbjct: 181 SLADWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYR 240 Query: 241 SQSAFSSMFRKALRSTPNQYLPRQEKRRITL 271 SQSAFS+MFRKALR+TPN YL RQE+RR++L Sbjct: 241 SQSAFSNMFRKALRTTPNHYLQRQERRRLSL 271 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 134/231 (58%), Gaps = 3/231 (1%) Query: 40 HSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYIGEVE 99 HSHR+GQL+ A+ G + T QG+W+VPPQ A+W+PP V H R+ + L+I + Sbjct: 37 HSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP-Q 95 Query: 100 GQVIGAQCRLLEVSVLLRELILALLAEPRDYAPHSRAGHVAELILSELGRAP--AIPVAI 157 + QC L +S LL ++I L + +DYAPH R +A +++ EL + A+P+ + Sbjct: 96 AASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLAAVLVEELEHSQRHALPLHL 155 Query: 158 PWPRDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQVHL 217 P P+ RL+AI + P + ++A W S R+ R ETG+ F W +Q+HL Sbjct: 156 PAPQHSRLRAIARHLAEHPADRRTVAQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHL 215 Query: 218 SEALVRLARGDAVGVVAQALGYRSQSAFSSMFRKALRSTPNQYLPRQEKRR 268 AL RLA G +V V+Q LGY S SAF +MFRK L P +Y+ +++ +R Sbjct: 216 MLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLGKPPARYMAQRQAQR 266 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 157 bits (397), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 129/238 (54%) Query: 14 VDAFQHLGRAVVAFARELAYRDLLRAHSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALW 73 +D + R VVA + + + HSHRR QLLY + G+MQV T G W+VPPQ A+W Sbjct: 16 IDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVW 75 Query: 74 VPPQVEHEIRMLSKVSMRTLYIGEVEGQVIGAQCRLLEVSVLLRELILALLAEPRDYAPH 133 +P EH+ RML V+ + +I + + C++L V LLREL++ Y H Sbjct: 76 IPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLAVRPLLRELLIEATRMDPHYVLH 135 Query: 134 SRAGHVAELILSELGRAPAIPVAIPWPRDRRLQAICEAILADPGRQFSLADWAGLGGASV 193 SR ++ L+L E+GRA IP +P P + RL +C LA P + A WA S Sbjct: 136 SREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISE 195 Query: 194 RTVIRLFPRETGLQFRHWVQQVHLSEALVRLARGDAVGVVAQALGYRSQSAFSSMFRK 251 RT R F +TG+ F+ W + + A+ RLA G V +A LGY +AFS+MFRK Sbjct: 196 RTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRK 253 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 122 bits (307), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 5/230 (2%) Query: 40 HSHRRGQLLYAVEGVMQVRTPQGVWMVPPQRALWVPPQVEHEIRMLSKVSMRTLYI-GEV 98 H H +G L+YA G+++V+ G W+VPP A+W+ V H + M + L++ +V Sbjct: 41 HQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVRQDV 100 Query: 99 EGQVIGAQCRLLEVSVLLRELILALLAEPRDYAPHSRAGHVAELILSELGRAPAIPVAIP 158 ++ C ++ VS LLRELI+ L + R + L++ E+ P +P +P Sbjct: 101 CARLPAFDC-VVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEVLTQPTLPFHLP 159 Query: 159 WP---RDRRLQAICEAILADPGRQFSLADWAGLGGASVRTVIRLFPRETGLQFRHWVQQV 215 WP D + +C+A+L DPG + A+WA +T R F + TG+ F W QQ+ Sbjct: 160 WPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKWRQQL 219 Query: 216 HLSEALVRLARGDAVGVVAQALGYRSQSAFSSMFRKALRSTPNQYLPRQE 265 L +L L +G + VA A GY S SA+++ F K P+ + P +E Sbjct: 220 RLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFFPARE 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 799,950 Number of extensions: 31811 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 4 Length of query: 274 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 190 Effective length of database: 1,222,130 Effective search space: 232204700 Effective search space used: 232204700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)