BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0768.p
         (412 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein...   684   0.0  

>gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/412 (90%), Positives = 392/412 (95%), Gaps = 1/412 (0%)

Query: 1   MTSATDSTASVAASADAPASS-AAIAAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK 59
           MTSAT+STA+  +SA  PA+S A +AAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK
Sbjct: 1   MTSATNSTAAAPSSATTPANSPAGLAAQPLVMSIILACGGAHLINDMIQALLPSIYPMLK 60

Query: 60  TGYGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPCGAVATLLGIVLLALAGS 119
           T YGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLP GAVATL+GIVLL++AGS
Sbjct: 61  TSYGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPSGAVATLVGIVLLSMAGS 120

Query: 120 FEAFLLAAALIGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV 179
           F AFLLAAAL+GIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV
Sbjct: 121 FPAFLLAAALVGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIV 180

Query: 180 VPYGQTNVAWFVLLSVLAIVVLSRVSAWYRGHLAAGKGRGKVRAAHQLPAATVRRALVVL 239
           VP+GQ NVAWFVLL++L+I+VL+RVS WYR HLAA KGR K RA H LPAATVRRALVVL
Sbjct: 181 VPFGQANVAWFVLLALLSILVLTRVSGWYRSHLAATKGRTKPRATHSLPAATVRRALVVL 240

Query: 240 ALLVFSKYFYMASFTSYFTFYLIERFQMSVASSQLYLFLFLAAVAVGTFVGGPIGDRIGR 299
           ALLVFSKYFYMASFTSYFTFYLI+RF +SVASSQLYLFLFL AVAVGTFVGGPIGDRIGR
Sbjct: 241 ALLVFSKYFYMASFTSYFTFYLIDRFHLSVASSQLYLFLFLGAVAVGTFVGGPIGDRIGR 300

Query: 300 KLVIWISILGAAPFALMLPHANLFWTAVLSVLIGLIISSAFSAIVVYAQELVPGKVGMIA 359
           KLVIWISILGAAPFALMLPHANLFWTAVLSV+IGL+ISSAFSAIVVYAQELVPGKVGMIA
Sbjct: 301 KLVIWISILGAAPFALMLPHANLFWTAVLSVVIGLVISSAFSAIVVYAQELVPGKVGMIA 360

Query: 360 GVFFGLMFGFGGIGAALLGHLADLYGIAWVYGLCAFLPLAGLLTVLLPDVRE 411
           GVFFGLMFGFGGIGAALLGHLADLYGIAWVYGLCAFLPLAG+LTV LPDVRE
Sbjct: 361 GVFFGLMFGFGGIGAALLGHLADLYGIAWVYGLCAFLPLAGILTVFLPDVRE 412


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 852,006
Number of extensions: 27193
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 8
Length of query: 412
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,203,190
Effective search space: 389833560
Effective search space used: 389833560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)