BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0763.p
         (581 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310305|ref|YP_003774397.1| sugar ABC transporter periplasm...  1182   0.0  

>gi|300310305|ref|YP_003774397.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 582

 Score = 1182 bits (3058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/581 (98%), Positives = 578/581 (99%)

Query: 1   MQNMRKIKLTVLVAAMAMAGVAGNAWADIKAAEKWVDSEFQPSTLSRAQQVSEMQWFIDA 60
           MQNMRKIKLTVL AAM MAGVAGNAWADIKAAEKWVDSEFQPSTLSR QQVSEMQWFIDA
Sbjct: 2   MQNMRKIKLTVLAAAMVMAGVAGNAWADIKAAEKWVDSEFQPSTLSRPQQVSEMQWFIDA 61

Query: 61  AAKLKAKGVKEIHVVSETLDTHAYESKTLAKAFEDITGIKVIHDVIQEGDVVEKMQTSLQ 120
           AAKLKAKGVKEIHVVSETLDTHAYESKTLAKAFE+ITGIKVIHDVIQEGDVVEKMQTSLQ
Sbjct: 62  AAKLKAKGVKEIHVVSETLDTHAYESKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSLQ 121

Query: 121 SGKSIYDGWVNDSDLIGTHYRNGQTVVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPDG 180
           SGKSIYDGWVNDSDLIGTHYRNGQTVVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPDG
Sbjct: 122 SGKSIYDGWVNDSDLIGTHYRNGQTVVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPDG 181

Query: 181 KLYQLPDQQFANLYWFRADWFARKDLQDKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKE 240
           KLYQLPDQQFANLYWFRADWFARKDLQ+KFKAKYGYELGVPQNWSAYEDIAAFFTNDVKE
Sbjct: 182 KLYQLPDQQFANLYWFRADWFARKDLQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKE 241

Query: 241 LDGKKIYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVG 300
           LDGKKIYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVG
Sbjct: 242 LDGKKIYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVG 301

Query: 301 ASVSRGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSAF 360
           ASV+RGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSAF
Sbjct: 302 ASVARGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSAF 361

Query: 361 TASMTKQGLPVVNADGSPKWRMAPGPHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAAW 420
           TASMTKQGLPVVNADGSPKWRMAPGPHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAAW
Sbjct: 362 TASMTKQGLPVVNADGSPKWRMAPGPHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAAW 421

Query: 421 LYAQFTTSKTVSLKKSIVGVTFIRDSDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTGT 480
           LYAQFTTSKTVSLKKSIVGVTFIRDSDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTGT
Sbjct: 422 LYAQFTTSKTVSLKKSIVGVTFIRDSDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTGT 481

Query: 481 NVPDYPKMAQLWWKNISSAISGEKTPQGAMDNLAEEMDGIMARLQRAGMKQCAPKLNPKK 540
           NVPDYPKMAQ+WWKNISSAISGEKTPQGAMDNLA+EMDGIMARLQRAGMKQCAPKLNPKK
Sbjct: 482 NVPDYPKMAQIWWKNISSAISGEKTPQGAMDNLADEMDGIMARLQRAGMKQCAPKLNPKK 541

Query: 541 DPASWLSDKGAPWAKLANEKPKGETIPYDKLLQAWKDGRVR 581
           DPA+WLSDKGAPWAKLANEKPKGETIPYDKLLQAWKDGRVR
Sbjct: 542 DPATWLSDKGAPWAKLANEKPKGETIPYDKLLQAWKDGRVR 582


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,001,921
Number of extensions: 90368
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,193,720
Effective search space: 586116520
Effective search space used: 586116520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)