BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0758.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 692 0.0 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 207 1e-54 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 206 3e-54 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 202 4e-53 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 196 2e-51 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/366 (93%), Positives = 355/366 (96%) Query: 1 VTLELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 +TLELKQVAKTVGA+THLYPLDL LAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL Sbjct: 1 MTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL 60 Query: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKL 120 VDGQDVTGVGVRERNLAMVYQQFINYPGLTV+ENIAAPLRLQKQPEQEISKRV EIA+KL Sbjct: 61 VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL 120 Query: 121 HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA Sbjct: 121 HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA 180 Query: 181 TGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPMNV 240 TGDTTVVYATTEPQEALLLGGHTAVMH+GRLLQ APTLELFNSPAST+VAAIFNDPPMN+ Sbjct: 181 TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL 240 Query: 241 LEATAVSTAPGVAAIRMSDGSVLEIAGRNLQLAEGQPCKLGIRCNDVRLETLAAPGVSLG 300 LEATA+++APGVAAI MSDGSVLEIAGR L L+EGQ CKLGIRCNDVRLE L PGVSLG Sbjct: 241 LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG 300 Query: 301 CRVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGQLLS 360 C VTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQG+LLS Sbjct: 301 CSVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS 360 Query: 361 APMETR 366 APMETR Sbjct: 361 APMETR 366 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 207 bits (527), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 197/353 (55%), Gaps = 17/353 (4%) Query: 3 LELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVD 62 + L+ V K G + +D + G VLLGP+ GK++ +R+IAGLDKP++G + + Sbjct: 4 ISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIG 63 Query: 63 GQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLHI 122 G+DVT + +R ++MV+Q + +P L+V +NI +R++K+P R+ +A+ L + Sbjct: 64 GRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL 123 Query: 123 AHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATG 182 AHLL+R P +LSGGQQQR AL RA+I AP+ L+DEPL NLD +LR+E+R E+ +L Sbjct: 124 AHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQL 183 Query: 183 DTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPMNVLE 242 + T+VY T + EA+ + ++ EGR+ Q A +L+ PA+ A PPMN+L Sbjct: 184 NMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLP 243 Query: 243 ATAVSTAPGVAAIRMSDGSVLEIAGRNLQLAE-GQ-PCKLGIRCNDVRLETLAAPGVSLG 300 + L I+G ++ L + GQ P +LG+R +RL A S+ Sbjct: 244 LEPHAEG-------------LVISGSDVILRDLGQTPWQLGLRPEHIRLAD--ASDSSVP 288 Query: 301 CRVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFD 353 V E G++T + R G L+ + G H + G V+++ A + FD Sbjct: 289 AVVETVEYFGADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFD 341 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 206 bits (524), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 199/355 (56%), Gaps = 5/355 (1%) Query: 2 TLELKQVAKTVGAQTHLYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLV 61 +++++ V K G+ + +D+ +A G VL+GP+ GK++L+R++AGL++ T G +L+ Sbjct: 3 SVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILI 62 Query: 62 DGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLH 121 G V V ++R++AMV+Q + YP +TV +N+A L L K+ + + +RV + A+ L Sbjct: 63 GGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILG 122 Query: 122 IAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFAT 181 + LL R P +LSGGQ+QR A+ RA+++ + L DEPL NLD KLR ++R+E+ L Sbjct: 123 LNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQR 182 Query: 182 GDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPMNVL 241 TT +Y T + EA+ + VM +G + Q L+L++ PA+ VA P MN + Sbjct: 183 LKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFI 242 Query: 242 EATAVSTAPGVAAIRMSDGS-VLEIAGRNLQLAEGQPCKLGIRCNDVRLETLAAPGVSLG 300 AT A G A + +DG+ V G LQ +GQ G+R + ++ A G + Sbjct: 243 PATLRRNATG-AEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHL---SIGAAGQGIA 298 Query: 301 CRVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 +V + E +G++T + R G+ L + H+ G + + ++ LFD + Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 202 bits (513), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 202/359 (56%), Gaps = 10/359 (2%) Query: 3 LELKQVAKTVGAQTH----LYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGR 58 + LKQV KT GA T ++ +D +A G V++GP+ GK++L+R++AGL++ ++G+ Sbjct: 4 IHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQ 63 Query: 59 VLVDGQDVTGVGVRERNLAMVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAE 118 +++ + V + +ER++AMV+Q + YP +TV++N+A L++Q + EI RV A Sbjct: 64 IVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAA 123 Query: 119 KLHIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISL 178 L + LL+R P +LSGGQ+QR A+ RA++++ + L DEPL NLD KLR ++R E+ L Sbjct: 124 ILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKL 183 Query: 179 FATGDTTVVYATTEPQEALLLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPM 238 A+ TT +Y T + EA+ LG VM+ G Q+ E++ PA+T VA+ PPM Sbjct: 184 HASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPM 243 Query: 239 NVLEATAVSTAPGVAAIRMSDGSVLEIAG--RNLQLAEGQPCKLGIRCNDVRLETLAAPG 296 N+L+ +A G A+ +S G+ +I + L A GQ LG+R + L L Sbjct: 244 NLLQGKL--SADG-ASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHL-LPILDGSA 299 Query: 297 VSLGCRVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ 355 L V L E G+E +H R G LV + +V G + S A FD + Sbjct: 300 AQLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 196 bits (499), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 190/348 (54%), Gaps = 4/348 (1%) Query: 18 LYPLDLRLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLA 77 L+PLDL + G VLLGP+ GK++++R+IAGL+ + G + + G V + RERN+A Sbjct: 20 LHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGTLRIGGTVVNDLPARERNVA 79 Query: 78 MVYQQFINYPGLTVWENIAAPLRLQKQPEQEISKRVNEIAEKLHIAHLLQRLPGELSGGQ 137 MV+Q + YP ++V++NIA LR K+P EI +RV E+A L++ LL+R P +SGGQ Sbjct: 80 MVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAALLNLEALLERKPRAMSGGQ 139 Query: 138 QQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATGDTTVVYATTEPQEAL 197 QQR A+ARA+IK + L DEPL NLD KLR +LR ++ L TT VY T + EA+ Sbjct: 140 QQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEAM 199 Query: 198 LLGGHTAVMHEGRLLQLAPTLELFNSPASTRVAAIFNDPPMNVLEATAVSTAPGVAAIRM 257 L +M +GR++Q EL+ P + A P MN L T V G I Sbjct: 200 TLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAMNFLSGT-VQRQDGQLFIET 258 Query: 258 SDGSVLEIAGRNLQLAEGQPCKLGIRCNDVRLETLAAPGVSLGCRVT--LAELSGSETYL 315 + R +L KL +R + VR+ P SL C V+ L E+ G++ L Sbjct: 259 AHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASLTCPVSVELVEILGADALL 318 Query: 316 HLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQ-GQLLSAP 362 R G+ L A + G+T+ +++ + +FD + G+ LS P Sbjct: 319 TTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESGENLSLP 366 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,129,437 Number of extensions: 47265 Number of successful extensions: 502 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 345 Number of HSP's successfully gapped: 135 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)