BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0754.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310295|ref|YP_003774387.1| C4-dicarboxylate transporter [H...   969   0.0  

>gi|300310295|ref|YP_003774387.1| C4-dicarboxylate transporter
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/501 (98%), Positives = 494/501 (98%)

Query: 1   MLAQLKATFKYFNDAVPFKLVPALIATAVLILLLLTPCPAGLEPKAWALVAIFLTTIVAI 60
           MLAQLKA FKYFNDAVPFKLVPALIATAVLI LLLTPCP GLEPKAWALVAIFLTTIVAI
Sbjct: 1   MLAQLKAAFKYFNDAVPFKLVPALIATAVLIALLLTPCPTGLEPKAWALVAIFLTTIVAI 60

Query: 61  ILKVMPIGVMAMMAIVIVSLSQVTSTSSKGAIADALASFSNPLIWLIVVAILISRGLKKT 120
           ILKVMPIGVMAMMAIVIVSLSQVTSTSSKGAI DALASFSNPLIWLIVVAILISRGLKKT
Sbjct: 61  ILKVMPIGVMAMMAIVIVSLSQVTSTSSKGAITDALASFSNPLIWLIVVAILISRGLKKT 120

Query: 121 GLGRRVGLMFIALLGKRTIGIGYGLAICELVLAPFTPSNTARGGGIVHPIMKSIANAFDS 180
           GLGRRVGLMFIALLGKRTIGIGYGLAICELVLAPFTPSNTARGGGIVHPIMKSIANAFDS
Sbjct: 121 GLGRRVGLMFIALLGKRTIGIGYGLAICELVLAPFTPSNTARGGGIVHPIMKSIANAFDS 180

Query: 181 DPAKGTQNKVGSYLALVNYHANPITSAMFLTATAPNPLVVNYVAKATGHALQLSWTTWAL 240
           DPAKGTQNKVGSYLALVNYHANPITSAMFLTATAPNPLVVNYVAKATGHALQL+WTTWAL
Sbjct: 181 DPAKGTQNKVGSYLALVNYHANPITSAMFLTATAPNPLVVNYVAKATGHALQLTWTTWAL 240

Query: 241 CMLLPGLVCLLIMPLVIYLLSPPELKSTPNAVDYARSELDKMGKLGASEKVMLGTFALLL 300
           CMLLPGLVCLLIMP+VIYLLSPPELKSTPNAVDYARSELDKMGKLGASEKVMLGTFALLL
Sbjct: 241 CMLLPGLVCLLIMPMVIYLLSPPELKSTPNAVDYARSELDKMGKLGASEKVMLGTFALLL 300

Query: 301 LLWANVPAMLLGAAFTLDPTVVAFVGLFVLIITGTIDWDDVLSEKSAWDTLVWFGALVML 360
           LLWANVPAMLLGAAFTLDPTVVAFVGLFVLIITGTIDWDDVLSEKSAWDTLVWFGALVML
Sbjct: 301 LLWANVPAMLLGAAFTLDPTVVAFVGLFVLIITGTIDWDDVLSEKSAWDTLVWFGALVML 360

Query: 361 AEQLNKTGVVAWFSDGMKAAIVASGMGWYAVAAVLLLVFVLSHYFFASTTAHISAMMLAF 420
           AEQLNKTGVVAWFS+GMKAAIVASGMGW AVAAVLLLVFVLSHYFFASTTAHISAMMLAF
Sbjct: 361 AEQLNKTGVVAWFSEGMKAAIVASGMGWIAVAAVLLLVFVLSHYFFASTTAHISAMMLAF 420

Query: 421 LTVGAQLLPPQYVVPFMLMMTAGSGVMMTLTHYATGTSPIIFGSGYVSMGKWWGVGFVMA 480
           LTVGAQLLPPQYVVPFMLMMTAGSGVMMTLTHYATGTSPIIFGSGYVSMGKWWGVGFVMA
Sbjct: 421 LTVGAQLLPPQYVVPFMLMMTAGSGVMMTLTHYATGTSPIIFGSGYVSMGKWWGVGFVMA 480

Query: 481 VVELLVFATVGTVWWKVLGYW 501
           VVELLVFATVG VWWK LGYW
Sbjct: 481 VVELLVFATVGMVWWKGLGYW 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,331,466
Number of extensions: 49991
Number of successful extensions: 286
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)