BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0753.p (251 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC t... 418 e-118 gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPa... 257 7e-70 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 202 2e-53 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 187 6e-49 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 177 5e-46 >gi|300310290|ref|YP_003774382.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 418 bits (1074), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/248 (84%), Positives = 227/248 (91%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 MSAPLLQ++AI+V YQGALLAL+EVSL +Q GEIHALLGANGAGKSTTLKAVSNLLAAQR Sbjct: 1 MSAPLLQIEAIEVRYQGALLALEEVSLEVQAGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 GQ+R+G IL++G+++ RSSPA+LVRQGLAQVLEGRHCFASL+VEENLLTGWP FTRR V Sbjct: 61 GQVRAGHILYEGREVGRSSPAELVRQGLAQVLEGRHCFASLTVEENLLTGWPAHFTRRTV 120 Query: 121 LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLV 180 LR ALERIYA FP L RRRSLAGLCSGGEQQM+ IGRALISRPRLLVLDEPSMGLAP V Sbjct: 121 LRAALERIYAFFPQLHQRRRSLAGLCSGGEQQMLAIGRALISRPRLLVLDEPSMGLAPKV 180 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQ 240 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLE+G SVL A+ LRQR+DIQ Sbjct: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLEHGRSVLSDEAQALRQRADIQ 240 Query: 241 SFYFGESR 248 SFYFGE R Sbjct: 241 SFYFGEGR 248 >gi|300311877|ref|YP_003775969.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 288 Score = 257 bits (656), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 127/245 (51%), Positives = 172/245 (70%) Query: 3 APLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQ 62 A L ++ I+V+Y +L L+ VSL + G+I ALLGANGAGKSTTLKA+SNLL A+RG Sbjct: 23 AKALAINNIEVIYDHVILVLKGVSLDVPEGKIVALLGANGAGKSTTLKAISNLLHAERGD 82 Query: 63 LRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLR 122 + G I F G+ + R +P DLV++G+ QV+EGRHCF L+VEENLLTG R A ++ Sbjct: 83 VTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISNAEVK 142 Query: 123 DALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVA 182 LE+IY FP L+ RR+S +G SGGEQQM IGRA++++P +++LDEPSMGLAP +V Sbjct: 143 HELEKIYDYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVE 202 Query: 183 DIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSF 242 +IF + LN +E V+ L+AEQN+ VAL+YA +LENG V++G A L D++ F Sbjct: 203 EIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEF 262 Query: 243 YFGES 247 Y G S Sbjct: 263 YLGVS 267 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 8/242 (3%) Query: 4 PLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQL 63 P+LQV+ + V Y G + A++ +SL+L GEI AL+GANGAGKST+L A+S L+ AQRG Sbjct: 9 PILQVEDLAVAY-GHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRG-- 65 Query: 64 RSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLRD 123 R+L GQD+ + SP +V G+ QV EGR +L+VEENL G R + V RD Sbjct: 66 ---RVLLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARD 122 Query: 124 ALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVAD 183 LE +Y++FP+L+NR LAG SGGEQQM+ IGRAL+++P++L+LDEPSMGLAPL++ + Sbjct: 123 -LEWVYSLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQE 181 Query: 184 IFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSFY 243 IF + +N+ G+ +L+ EQN AL+ A R VLE G VL+ L + Y Sbjct: 182 IFRIVQEINK-TGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAY 240 Query: 244 FG 245 G Sbjct: 241 LG 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 187 bits (475), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 147/242 (60%), Gaps = 9/242 (3%) Query: 5 LLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQRGQLR 64 +LQ D + Y GA+ AL VSL ++ GEI L+GANGAGK+T L + R + Sbjct: 2 MLQFDKVHTHY-GAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCG-----RPRAS 55 Query: 65 SGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAVLRDA 124 SGR++F+GQDI + +++R+GLA EGR F SL+V ENL G F + Sbjct: 56 SGRVIFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMG--AFFASNEAIEQG 113 Query: 125 LERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLVVADI 184 +E ++ +FP L+ R AG SGGEQQM+ IGRAL+S+PRLL+LDEP++GLAPLV+A I Sbjct: 114 IEYVFGLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQI 173 Query: 185 FAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQSFYF 244 F + R RE GV + + EQN+ AL A R VLENG V+ L SD++ Y Sbjct: 174 F-DIIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYL 232 Query: 245 GE 246 G Sbjct: 233 GH 234 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 177 bits (450), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 155/246 (63%), Gaps = 6/246 (2%) Query: 1 MSAPLLQVDAIQVLYQGALLALQEVSLTLQPGEIHALLGANGAGKSTTLKAVSNLLAAQR 60 M+ +L+V + V Y G + A++ + L + GE+ L+GANGAGK+TTLKA++ L A R Sbjct: 1 MTTNILKVQQLSVAY-GGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASR 59 Query: 61 GQLRSGRILFDGQDIARSSPADLVRQGLAQVLEGRHCFASLSVEENLLTGWPGRFTRRAV 120 + G I + GQ + +LV+ LA V EGR F +S++ENLL G + + Sbjct: 60 VE---GHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQI 116 Query: 121 LRDALERIYAIFPLLRNRRRSLAGLCSGGEQQMVVIGRALISRPRLLVLDEPSMGLAPLV 180 D +++ +A+FP L+ R +AG SGGEQQM+ + RAL+S P+LL+LDEPSMGL+P++ Sbjct: 117 AAD-IDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIM 175 Query: 181 VADIFAQLSRLNREEGVALLVAEQNSAVALQYAHRATVLENGASVLQGPAEVLRQRSDIQ 240 V IF ++ R +G+ +L+ EQN+ +AL+ AHR V+E+G +QG A+ + ++ Sbjct: 176 VEKIF-EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVK 234 Query: 241 SFYFGE 246 + Y GE Sbjct: 235 AAYLGE 240 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,039 Number of extensions: 30288 Number of successful extensions: 539 Number of sequences better than 1.0e-08: 120 Number of HSP's gapped: 333 Number of HSP's successfully gapped: 133 Length of query: 251 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 168 Effective length of database: 1,226,865 Effective search space: 206113320 Effective search space used: 206113320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)