BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0750.p (353 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310287|ref|YP_003774379.1| branched-chain amino acid ABC t... 528 e-151 gi|300311879|ref|YP_003775971.1| amino acid ABC transporter perm... 328 5e-91 gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC t... 106 4e-24 gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC t... 96 5e-21 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 93 3e-20 >gi|300310287|ref|YP_003774379.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 347 Score = 528 bits (1361), Expect = e-151, Method: Compositional matrix adjust. Identities = 287/312 (91%), Positives = 300/312 (96%) Query: 35 YGVLPWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAAYNINL 94 Y V+PW AS Y+IDALLIPFLALSLAAVGLNLLTGYAGQLSLGS+AFMAVGAFAAYN+NL Sbjct: 33 YVVVPWIASAYLIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSAAFMAVGAFAAYNLNL 92 Query: 95 RVGGLPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN 154 RV GLPLL+SI LAGLAATA+GLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN Sbjct: 93 RVAGLPLLVSIVLAGLAATAIGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN 152 Query: 155 DNPSGVIDAPALVVGGISFDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQ 214 DNPSGVIDAP LVVGG++FDTPAGRYLFAL IVTVLTLL WRLV +QTGHHFIAVRDNEQ Sbjct: 153 DNPSGVIDAPPLVVGGLAFDTPAGRYLFALAIVTVLTLLCWRLVQSQTGHHFIAVRDNEQ 212 Query: 215 AARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGG 274 AARVIG+PVLRTKLLAFAISSF+IGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGG Sbjct: 213 AARVIGVPVLRTKLLAFAISSFVIGVAGVLWGFVYLRTVEPAGFNLDRSLQILFIVIIGG 272 Query: 275 LATIRGAFLGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQG 334 LATIRGAF GAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQG Sbjct: 273 LATIRGAFFGAALIVVFPLLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQG 332 Query: 335 LAALWERARRSL 346 LAALW+R R+ L Sbjct: 333 LAALWQRGRQRL 344 >gi|300311879|ref|YP_003775971.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 358 Score = 328 bits (840), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 176/322 (54%), Positives = 233/322 (72%), Gaps = 3/322 (0%) Query: 29 LLLLVAYGVLPWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFA 88 L ++ A+ +P S Y A+L+PFL +LAA+GLN+LTGYAGQLSLGS+AFMAVGA+A Sbjct: 31 LFMVFAFVGVPLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYA 90 Query: 89 AYNINLRVGGLPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVK 148 AYN LRV G+P++ ++ L+G A VG++FGLPSLR++GFYLAV+TLAAQFFV W L K Sbjct: 91 AYNFQLRVDGIPIVATLLLSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTK 150 Query: 149 FSWFSNDNPSGVIDAPALVVGGISFDTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIA 208 F WFSN++ SGVI P + GI+ DTP +YLF L +V+VL L++ LV + TG ++A Sbjct: 151 FPWFSNNSSSGVISTPKIDFFGIAIDTPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMA 210 Query: 209 VRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQILF 268 VRD + AA VIGIP++RTKL AFA+SSF GVAG L+ F YL +VEP GF+LD S +ILF Sbjct: 211 VRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILF 270 Query: 269 IVIIGGLATIRGAFLGAALIVVFPLLLSR---LGSLLLGQWFDSGVLEMSQRIVLGALII 325 ++IIGG+ +I G+FLG+A I++ P+ L + LL F + + Q +V GALII Sbjct: 271 MIIIGGVGSILGSFLGSAFILLLPIFLDNALPPLAALLHLPFTNATVSHIQMMVFGALII 330 Query: 326 FFLIVEPQGLAALWERARRSLH 347 FFLI EP GLA LW+ A+ L Sbjct: 331 FFLIAEPHGLARLWQIAKEKLR 352 >gi|300311115|ref|YP_003775207.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 655 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 152/273 (55%), Gaps = 11/273 (4%) Query: 29 LLLLVAYGVLPWAASNYVIDALLIPFLALSLAAVGLNLLTGYAGQLSLGSSAFMAVGAFA 88 LL +VA +P N L+ L ++ GL+++ GY GQ+SLG + +G++A Sbjct: 10 LLGIVALAGIPMVVHNPYYLHLIETILIYAILLFGLDIVVGYTGQVSLGHAGLFGIGSYA 69 Query: 89 AYNINLRVGGLPLLLSIALAGLAATAV-GLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLV 147 A + ++ G+P+ +++ A +A TAV G + LP+LR+ G YLA+ TLA +Q +L+ Sbjct: 70 AGVLFFKL-GMPIFVTVP-AAIAVTAVFGAILALPALRVTGPYLAMVTLAFGTIIQ-ILI 126 Query: 148 KFSWFSNDNPSGV-IDAPALVVGGISFDTPAGRYLFALGIVTVLTLL-SWRLVLTQTGHH 205 F + P G+ + P ++GG YL A ++ VL++L R++ + G Sbjct: 127 NEMTFLTEGPLGIKLQKP--MIGGDKMSEVQFFYLVA--VLMVLSMLVVHRILKSNLGRA 182 Query: 206 FIAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVYLRTVEPAGFNLDRSLQ 265 F A+RD+ A+ +G+ V R K+ AF IS+ + G++G L+ + + P +N + ++ Sbjct: 183 FQALRDSPIASDCMGVSVYRYKVYAFIISAALAGLSGALYAYSE-EYISPNTYNFELTIM 241 Query: 266 ILFIVIIGGLATIRGAFLGAALIVVFPLLLSRL 298 L VI+GG + G+ +GA ++V+ P LLS + Sbjct: 242 FLLAVIMGGRKSRIGSLIGALIVVMLPSLLSDI 274 >gi|300309520|ref|YP_003773612.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 404 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 64/349 (18%) Query: 61 AVGLNLLTGYAGQLSLGSSAFMAVGAFAA---------------YNINLRVGG------- 98 A+GLN++ G+AG L LG AF A+GA++A N VG Sbjct: 54 ALGLNVVVGFAGLLDLGYIAFYAIGAYSAGLLASPQFAAVIESFVNTYPSVGNFLVWLCG 113 Query: 99 ---------LPLLLSIALAGLAATAVGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKF 149 L L L + ++ A G + G P+L+LRG YLA+ TL ++ + Sbjct: 114 PEIVQNGIHLSLWLIVPISAFLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNL 173 Query: 150 SWFSN--DNPSGV--IDAPALVVG----------------GISFDTPAGRYLFALGIVTV 189 + N + P G+ ID P V G G+S + Y L + Sbjct: 174 NAPVNITNGPQGINLID-PIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIG 232 Query: 190 LTLLSWRLVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFAISSFIIGVAGVLWGFVY 249 + S RL ++ G ++A+R++E AA+ +GI KLLAFA+ + GVAG ++G + Sbjct: 233 VIFFSVRLQDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFG-AF 291 Query: 250 LRTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFPLLLSRLGS----LLLGQ 305 V P F+L S+ +L +V++GG+ I G LG ++ P +L + + G+ Sbjct: 292 QGFVSPESFSLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGK 351 Query: 306 -WFDSGVLEMSQRIVLGALIIFFLIVEPQGLAALWERARRSLHQRASST 353 W D+ VL ++++ G ++ ++ P G LW R A T Sbjct: 352 VWIDAEVL---RQLLYGLAMVVIMLTRPAG---LWPSPRHEDRPEADHT 394 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/294 (32%), Positives = 144/294 (48%), Gaps = 24/294 (8%) Query: 58 SLAAVGLNLLTGYAGQLSLGSSAFMAVGAFAAYNINLRVGGLP-LLLSIAL--AGLAATA 114 +L A+GL LLTG G S G +AF+ +GA+ + G P L L + L G++A Sbjct: 39 ALVAIGLVLLTGIGGMTSFGQAAFVGMGAYTTSYLTTVHGVSPWLTLPVGLFITGVSAYV 98 Query: 115 VGLVFGLPSLRLRGFYLAVSTLAAQFFVQWVLVKFSWFSN-DNPSGVIDAPALVVGGISF 173 +G + +LR+ G YL ++T+A + ++ K + D SG+ PAL + G+ Sbjct: 99 LGRI----TLRMSGHYLPLATIAWGISLYFLFGKVDFLGKYDGISGI---PALQLAGLDL 151 Query: 174 DTPAGRYLFALGIVTVLTLLSWRLVLTQTGHHFIAVRDNEQAARVIGIPVLRTKLLAFAI 233 Y IV +S L+ ++ G A++ A +G+ R K+L F Sbjct: 152 AKERHLYYLIWAIVLAAAWVSLNLLDSRAGRAIRALKGGRSMAEAMGVDTGRYKILIFVF 211 Query: 234 SSFIIGVAGVLWGFVYL-RTVEPAGFNLDRSLQILFIVIIGGLATIRGAFLGAALIVVFP 292 ++ + V+G W F ++ RTV P+ F+L ++ LFIV++GG+A I GA LGA V Sbjct: 212 AALLASVSG--WLFAHMQRTVNPSPFSLAMGIEYLFIVVVGGIAHIWGALLGAG---VLK 266 Query: 293 LLLSRLGSLLLGQWFDSGVLEMSQRIVLGALIIFFLIVEPQGL----AALWERA 342 LL +L LL D G E IV G ++I L GL ALW RA Sbjct: 267 LLSDQLQVLLPALLGDGGSYE---SIVFGLILILLLKYAGGGLWPWVRALWLRA 317 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 956,520 Number of extensions: 38434 Number of successful extensions: 303 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 31 Length of query: 353 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 267 Effective length of database: 1,212,660 Effective search space: 323780220 Effective search space used: 323780220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)