BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0748.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC t... 435 e-123 gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPa... 273 9e-75 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 216 2e-57 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 197 6e-52 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 197 1e-51 >gi|300310285|ref|YP_003774377.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 435 bits (1118), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/264 (85%), Positives = 239/264 (90%), Gaps = 2/264 (0%) Query: 28 RQASAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPT 87 R ++APVLQL VSLSFGGVQAL H+DLA+H REILAVIGPNGAGKSSLVNVMSGLYRPT Sbjct: 2 RASAAPVLQLEGVSLSFGGVQALRHVDLALHEREILAVIGPNGAGKSSLVNVMSGLYRPT 61 Query: 88 QGQVQLAGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIA 147 QG V L GR QVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASF+EQI Sbjct: 62 QGTVSLGGRRLRQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFVEQII 121 Query: 148 GLGRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLD 207 GLGRARRER ARA A+QM+AFLDL A+AER VGGLPYGLQKRVELARALVA+PRLLLLD Sbjct: 122 GLGRARRERIDARAQAEQMMAFLDLRAYAERQVGGLPYGLQKRVELARALVARPRLLLLD 181 Query: 208 EPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTP 267 EPMAGMTVTEKSEMA FVRAARDQF TAILLIEHDIGLVF LSDRV VL++G KIADG P Sbjct: 182 EPMAGMTVTEKSEMADFVRAARDQFDTAILLIEHDIGLVFGLSDRVVVLHHGSKIADGAP 241 Query: 268 AAVRQDAAVIEAYLGVAHREQEAA 291 AAVRQDAAVIEAYLGVA +QEAA Sbjct: 242 AAVRQDAAVIEAYLGVA--QQEAA 263 >gi|300311881|ref|YP_003775973.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 293 Score = 273 bits (699), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 141/283 (49%), Positives = 188/283 (66%), Gaps = 3/283 (1%) Query: 3 MTSTLQPQLAPLELGAAAHATAPLARQASAPVLQLSDVSLSFGGVQALSHIDLAIHAREI 62 + S L P +P + A A A R+ +L L ++SLSFGGV+AL+ I + EI Sbjct: 14 LPSGLPPVASPDD---EAPAVAANGRRIGEVILDLQNISLSFGGVKALTDISFDVREHEI 70 Query: 63 LAVIGPNGAGKSSLVNVMSGLYRPTQGQVQLAGRYWPQVPTARLGRLGVARTFQNLALFK 122 A+IGPNGAGKSS++NV++G+Y P +G++ G+ + + + R G+ARTFQN+ALFK Sbjct: 71 RAIIGPNGAGKSSMINVINGVYHPQKGRILYRGQPRAGMHPSAIARQGIARTFQNIALFK 130 Query: 123 GLSVRDNIVLGRVNAMRASFLEQIAGLGRARRERQHARALADQMIAFLDLGAHAERAVGG 182 G++V DNI+ GR MR+ L G AR E R +Q+I FL++ + VG Sbjct: 131 GMTVLDNIMTGRNTKMRSGLLSNAMWWGAARNEEIEHRRKVEQVIDFLEIQHIRKTPVGR 190 Query: 183 LPYGLQKRVELARALVAQPRLLLLDEPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHD 242 LPYGLQKRVELARAL A+P +LLLDEPMAGM V EK +M F+ DQFGT I+LIEHD Sbjct: 191 LPYGLQKRVELARALAAEPHMLLLDEPMAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHD 250 Query: 243 IGLVFDLSDRVAVLNYGRKIADGTPAAVRQDAAVIEAYLGVAH 285 +G+V D+SDRV VL+YG+KI DGTP V + VI+AYLG +H Sbjct: 251 MGVVMDISDRVVVLDYGKKIGDGTPEEVMGNEDVIKAYLGTSH 293 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 161/249 (64%) Query: 34 VLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQVQL 93 +L++S++S+ FGG+ A+ + LA+ RE+ A+IGPNGAGK+++ N +SG YRPT G++ L Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 94 AGRYWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLGRVNAMRASFLEQIAGLGRAR 153 G + P+ ++ + G+ RTFQN+ LFK ++V +N+++ + + + L + R Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 154 RERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLLLLDEPMAGM 213 + Q A A + L L A A R G L YGLQ+RVE+AR ++ +PRLLLLDEP AG+ Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 214 TVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIADGTPAAVRQD 273 EK E++ + R + G A+LLIEHD+ L+ +SDR+ V+ +G+ I GTP VR D Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 274 AAVIEAYLG 282 VI+AYLG Sbjct: 248 ERVIKAYLG 256 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 197 bits (502), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 110/261 (42%), Positives = 162/261 (62%), Gaps = 13/261 (4%) Query: 31 SAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQ 90 S +L++ DVS FGG+QAL+ + + I +I +IGPNGAGK++ NV++GLY+P G Sbjct: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGT 61 Query: 91 VQLAGR-YWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLG-----RVNAMRASFLE 144 +L G+ Y P P + + G+ARTFQN+ LF ++V +N+++G R N A F Sbjct: 62 FELDGKPYSPSAP-HEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 145 QIAGLGRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLL 204 + AR E R + +++ F+ +G A+R L YG Q+R+E+ARAL P+LL Sbjct: 121 KA-----AREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLL 175 Query: 205 LLDEPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIAD 264 LDEP AGM TEK + + + + G ILLIEHD+ L+ L +R+ VL+YG+ IA+ Sbjct: 176 ALDEPAAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 234 Query: 265 GTPAAVRQDAAVIEAYLGVAH 285 G PA V+++ AVIEAYLG H Sbjct: 235 GVPADVQKNPAVIEAYLGAGH 255 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 197 bits (500), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/261 (41%), Positives = 162/261 (62%), Gaps = 13/261 (4%) Query: 31 SAPVLQLSDVSLSFGGVQALSHIDLAIHAREILAVIGPNGAGKSSLVNVMSGLYRPTQGQ 90 S +L++ DVS FGG+QAL+ + + I +I +IGPNGAGK++ NV++GLY+P G Sbjct: 2 SQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGT 61 Query: 91 VQLAGR-YWPQVPTARLGRLGVARTFQNLALFKGLSVRDNIVLG-----RVNAMRASFLE 144 +L G+ Y P P + + G+ARTFQN+ LF ++V +N+++G + N A F Sbjct: 62 FELDGKPYSPSAP-HEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 145 QIAGLGRARRERQHARALADQMIAFLDLGAHAERAVGGLPYGLQKRVELARALVAQPRLL 204 + AR E R + +++ F+ +G A+R L YG Q+R+E+ARAL P+LL Sbjct: 121 KA-----AREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLL 175 Query: 205 LLDEPMAGMTVTEKSEMAGFVRAARDQFGTAILLIEHDIGLVFDLSDRVAVLNYGRKIAD 264 LDEP AGM TEK + + + + G ILLIEHD+ L+ L +R+ VL+YG+ IA+ Sbjct: 176 ALDEPAAGMNATEKLGLRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAE 234 Query: 265 GTPAAVRQDAAVIEAYLGVAH 285 G PA V+++ AVIEAYLG H Sbjct: 235 GVPADVQKNPAVIEAYLGAGH 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 866,408 Number of extensions: 38085 Number of successful extensions: 572 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 343 Number of HSP's successfully gapped: 147 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)