BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0743.p (735 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 860 0.0 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 238 2e-63 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 227 2e-60 gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 224 2e-59 gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst... 115 2e-26 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/727 (65%), Positives = 572/727 (78%), Gaps = 3/727 (0%) Query: 9 WQGSAALVLLFVLGQTLLALWRRQWGLDLIALVTLAGALALQENLTAAVIALMFVTGRAL 68 W +VL+ VL T +A+ R LDLIALV++AGA+ L+E+L AAVIALMF GRAL Sbjct: 11 WLAGPLVVLMAVLADTAMAMRRGGMKLDLIALVSIAGAVLLREDLVAAVIALMFAGGRAL 70 Query: 69 ENHAERRAQQDMSALLAKVPQRAHRYENGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL 128 E+ A+RRAQQ+MSALL K P A+RYE RIV + L +RPGDRLLVR GE VPVDG LL Sbjct: 71 ESVAQRRAQQEMSALLGKAPHVANRYEGERIVTIGLNLVRPGDRLLVRPGEPVPVDGRLL 130 Query: 129 GAAVVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSAQ 188 G AVVD+S L+GESLP+S QGA L SG +NAG AF+LLA+ST + T ++RLV +AQ Sbjct: 131 GPAVVDESMLTGESLPVSHPQGATLASGCVNAGNAFDLLATSTDQSSTFAQVLRLVQAAQ 190 Query: 189 QSRAPAARLADRYALWFVPVALGLAALAWLLSGEPERALAVAVVATPCPLILAVPVALVC 248 S+APAAR+ADRYAL F+P+ L +AAL+WLL+G+P RALAV VVATPCPLILAVPVA+VC Sbjct: 191 ASQAPAARMADRYALLFIPLVLAMAALSWLLTGDPRRALAVVVVATPCPLILAVPVAIVC 250 Query: 249 AMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVAPGMEPHDLLRLA 308 AMSRCAQRGVLIKHGGALEKLA + TLF DKTGTLT+GKARL + P ++ +LLRLA Sbjct: 251 AMSRCAQRGVLIKHGGALEKLAQVRTLFFDKTGTLTAGKARLMNMVTTPSIQADELLRLA 310 Query: 309 ASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLTGQVDGRQVRVGTRDFVLGL 368 ASLEQ+S H IAQAVV+AA+ R L L++P+QV EQPGAGL+G+VDG+ VRVG +V+G Sbjct: 311 ASLEQMSNHVIAQAVVSAAIERALVLSIPDQVQEQPGAGLSGRVDGKLVRVGAMQYVIGP 370 Query: 369 DALPDWAVHPGARIGYEGTAGVYLALDGHLAGVMQLADQVRLETPRALRLLRTLGAQRIV 428 A P W R+ YEG AGV +A+DG L GV+ LAD +RL+TPRALR LR LGA+RIV Sbjct: 371 SAAPPWTSGLRDRLKYEGGAGVCVAVDGQLCGVLYLADDIRLDTPRALRQLRALGAKRIV 430 Query: 429 MLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQGVTMMVGDGVNDAPALAAA 488 MLTGD R+VA TIG +LG DD++ EQ+PASKL AI+QA ++GVTMMVGDG+NDAPALAAA Sbjct: 431 MLTGDRRDVAMTIGSSLGFDDVMPEQSPASKLAAIKQASREGVTMMVGDGINDAPALAAA 490 Query: 489 DVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRRIALQSVVAGMGLSLLAMV 548 D+GVAMGARGAAAAAESAQVVLLVDRLDRLAFAVR+AQQ R+IALQSVVAGMGLS AM+ Sbjct: 491 DIGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRMAQQARKIALQSVVAGMGLSGCAML 550 Query: 549 VAALGYLPPVAGAVLQELIDVAVILNALRVLTLEKEEARGQISAADLQALQQEHAALAPV 608 AA GYLPPVAGA+LQE IDVAVILNALRVL +E+ ++SA D Q L++EH L P+ Sbjct: 551 AAAFGYLPPVAGAILQEFIDVAVILNALRVLYVERGNLSDRLSAEDCQTLREEHVRLQPI 610 Query: 609 IDRLLWLAERCDVLPVTQLREQLHSVSGLLTTRLLPHESEDDARLYPRLARLIGGRDPLA 668 IDRL+WLA+R + L +RE+L +S L LL HE++DD LYPRLA+LIGG DP+ Sbjct: 611 IDRLVWLADRVEDLSSAAMREELVLLSAQLQGNLLQHEAQDDGVLYPRLAQLIGGEDPMG 670 Query: 669 SMSSTHREIHRLSRTIERLAADMNTCAASQPPDAATSQEVRHALYALEAILRLHFAQEEE 728 +MSS HREI+RLSRT++RLA + D A EVR LYAL A+LRLHFAQEEE Sbjct: 671 AMSSMHREIYRLSRTVDRLA---TQAPDDEQQDDAFMLEVRRTLYALHAVLRLHFAQEEE 727 Query: 729 IFHGLSS 735 IFHGLS+ Sbjct: 728 IFHGLSA 734 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 192/592 (32%), Positives = 312/592 (52%), Gaps = 38/592 (6%) Query: 14 ALVLLFVLGQTLLALW--RRQWGLDLIALVTLA--GALALQENLTAAVIALMFVTGRALE 69 A +LL LG TL W R + L++ L++LA GA + + AAV+ ++F +E Sbjct: 189 AAILLGGLG-TLKKGWIALRNFSLNMNFLMSLAVIGAAVIGQWPEAAVVIVLFTLAEMIE 247 Query: 70 NHAERRAQQDMSALLAKVPQRA-HRYENGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL 128 + RA+ ++ LLA P A R E+G V + D + V GE VP+DG +L Sbjct: 248 ALSLDRARNAIAGLLAMTPDMATRRGEDGVWSTVPARTVTVDDTVRVAPGERVPLDGLVL 307 Query: 129 -GAAVVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSA 187 G+ ++Q+ ++GES+P+ G + +G+IN AFE+ ++ TL IV+ V A Sbjct: 308 SGSTSINQAPITGESIPVQKQAGDPVFAGTINEQGAFEMRVTAAQGDSTLARIVKSVQQA 367 Query: 188 QQSRAPAARLADRYALWFVPVAL--------------GLAALAWLLSGEPERALAVAVVA 233 Q RAP R D +A +++P + G A WL +AL + V+A Sbjct: 368 QGQRAPTQRFVDNFARYYIPAVVVMAVLVALLPPLLAGAAFQPWLY-----KALVLLVIA 422 Query: 234 TPCPLILAVPVALVCAMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLT-A 292 PC L+++ PV +V ++ A+ G+L+K G LE+ L L LDKTGTLT GK R+T Sbjct: 423 CPCALVISTPVTIVSGLASAARHGILVKGGVYLEQGRQLRALALDKTGTLTFGKPRVTDV 482 Query: 293 IDVAPGMEPHDLLRLAASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLTGQV 352 + + + LL+LA SL S H +++A+ A + ++ + + G G+ G++ Sbjct: 483 VSLQAQADQQALLQLAVSLAARSDHPVSRAIAAQEEIATVEVS---EFAALAGRGVQGRI 539 Query: 353 DGRQVRVGTRDFVLGL-DALPDWAVHPGARIGYEGTAGVYLALDGHLAGVMQLADQVRLE 411 +G+ + +G V L P+ A +G L LDG ++ +AD VR Sbjct: 540 NGQLLHLGNHRLVHELGQCSPELEARLQA-FEKQGKTTTVLCLDGQPQLLVAVADTVRPS 598 Query: 412 TPRALRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQ-G 470 + +A+ LR LG + ++MLTGD+ A I G+ D +Q P KL+AI + Q+ G Sbjct: 599 SRQAVAELRALGVE-VIMLTGDNSHTAQAIAAQTGISDARGDQLPEDKLKAIEELSQRHG 657 Query: 471 V--TMMVGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQT 528 V MVGDG+NDAPALA AD+G AMGA G A E+A V L+ D L ++ +RL+++ Sbjct: 658 VRGVGMVGDGINDAPALARADIGFAMGAAGTDTALETADVALMDDDLRKIPDFIRLSRKA 717 Query: 529 RRIALQSVVAGMGLSLLAMVVAALGYLPPVAGAVLQEL-IDVAVILNALRVL 579 + +Q++ +G+ + + +A +G + + AV ++ + V+ N LR++ Sbjct: 718 HAVLVQNISIALGIKAVFLGLALVG-MSSLWMAVFADMGASLIVVFNGLRLV 768 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 202/586 (34%), Positives = 308/586 (52%), Gaps = 29/586 (4%) Query: 12 SAALVLLFVLGQTL---LALWRRQWGLDLIALVTLAGALALQENL---TAAVIALMFVTG 65 S + LL LG + L+LW QW + L T+ G +L ++AV+ + + G Sbjct: 152 SGNMDLLVALGTSAAYGLSLW--QW----LTLPTMPGHAMAMPHLYFESSAVVITLVLLG 205 Query: 66 RALENHAERRAQQDMSALLAKVPQRAHRYENGRIVEVALAQIRPGDRLLVRSGETVPVDG 125 + LE A+R+ ++AL A P+ A +G+ +EV LAQ+R GD +++R GE VPVDG Sbjct: 206 KWLEGRAKRQTADAIAALNALRPENARVRRDGQDIEVPLAQVRVGDLVVLRPGERVPVDG 265 Query: 126 TLL-GAAVVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLV 184 + G + +D++ L+GES P + G L +GSINA + ++ + L IVR+V Sbjct: 266 VVREGRSHLDEAMLTGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAETVLARIVRMV 325 Query: 185 HSAQQSRAPAARLADRYALWFVPV----ALGLAALAWLLSGEPERAL----AVAVVATPC 236 AQ ++AP RL D+ + FVP +L L+ G E+AL AV V+A PC Sbjct: 326 EQAQAAKAPIQRLVDQVSAVFVPAVLLLSLLTLLGWGLVQGNWEQALLNAVAVMVIACPC 385 Query: 237 PLILAVPVALVCAMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVA 296 L LA P A++ A+ G+LIK ALE ++ + DKTGTLT G RL ++ Sbjct: 386 ALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFDKTGTLTLGHPRLLELEAT 445 Query: 297 PGMEPHDLLRLAASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLTGQVDGRQ 356 P +P +LL LAA+L+ S H + +AV AA EQV G G+ G V+GRQ Sbjct: 446 PSTQPDELLALAAALQAHSEHPLGRAVREAAAQSAQAARQAEQVRSVAGLGIEGVVEGRQ 505 Query: 357 VRVGTRDFVLGLDALPDWAVHPGARIGYEGTAGVYLALDG----HLAGVMQLADQVRLET 412 + +G+ ++ L A ++ +G +LA + G++ DQ++ Sbjct: 506 LMLGSSRWMQQLQAHAPALQARAEQLQAQGRTLSWLARRNDSGVEVLGLLAFGDQIKPGA 565 Query: 413 PRALRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQG-- 470 A+ L +G R ML+GD+ A + LG+ ++ +E PA K EA+ RQ G Sbjct: 566 QAAIATLHRMGV-RSAMLSGDNLGAAQQVASELGIQEVRAEVLPADKAEAVTALRQGGAQ 624 Query: 471 VTMMVGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRR 530 V MVGDGVNDAPALAAADVG+AM + G A ++A V L+ +A A+ ++++T Sbjct: 625 VVAMVGDGVNDAPALAAADVGMAM-STGTDVAMQAAGVTLMHGDPGLVADAIDISRRTYA 683 Query: 531 IALQSVVAGMGLSLLAMVVAALGYLPPVAGAVLQELIDVAVILNAL 576 Q++ +L+ + +AALG L P+ V+V+ NAL Sbjct: 684 KIRQNLFWAFIYNLVGIPLAALGLLNPMLAGAAMAFSSVSVVSNAL 729 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 205/538 (38%), Positives = 277/538 (51%), Gaps = 39/538 (7%) Query: 75 RAQQDM--SALLAKVPQRAHRYENGRIVEVALAQIRPGDRLLVRSGETVPVDGTLL-GAA 131 R QQ SALLA P + E +V AQ+R GD +L R G+T+ D LL GA Sbjct: 313 RMQQAFPASALLA--PGYPEQRETTLVVA---AQLREGDVILARPGDTIAADACLLEGAG 367 Query: 132 VVDQSTLSGESLPLSCAQGAFLPSGSINAGEAFELLASSTAEQGTLGHIVRLVHSAQQSR 191 D + LSGES P S G P G++N + L + TL + RL A Q + Sbjct: 368 EFDLALLSGESRPQSFQIGQEAPGGAVNLSQPVFLRVVRATGESTLAALTRLAEQAGQGK 427 Query: 192 APAARLADRYALWFVPVALGLAA---LAWLLSGEPERA----LAVAVVATPCPLILAVPV 244 A+ AD A FV L LA LAW L +P RA +AV VV+ PC L LA P Sbjct: 428 PALAQWADVVASRFVVALLLLAGATFLAWQLI-DPTRAWSTAIAVLVVSCPCALSLATPS 486 Query: 245 ALVCAMSRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAI--DVAPGMEPH 302 AL A R + G LI G LE L T+ DKTGTLT G+ +LTA+ DV + Sbjct: 487 ALAAATDRLLRAGTLIVRGNVLETLQRADTIVFDKTGTLTQGRPQLTALWSDV----DCQ 542 Query: 303 DLLRLAASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLTGQVDGRQVRVGTR 362 L +AA++E+ S H +A+A+V R + EQ++ GAG+ G ++G R+G+R Sbjct: 543 RSLAIAAAMERGSLHPLAKALVEEGARRQVDALEVEQLTSVTGAGMQGMIEGDLYRIGSR 602 Query: 363 DFVLGL--DALPDWAVHPGARIGYEGTAGVYL-ALDGHLAGVMQLADQVRLETPRALRLL 419 FV GL ALP + A G VYL + DG LA LAD +R + + Sbjct: 603 SFVAGLAGTALPPVLLQSAA----SGAGSVYLGSSDGWLA-RFDLADALRTDAVATVAAF 657 Query: 420 RTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASKLEAIRQARQQG-VTMMVGDG 478 R LG R ++L+GD EV + A G+ ++ + TP KL+ +R ++ G V +VGDG Sbjct: 658 RALGL-RTILLSGDQPEVCAEVAAAAGISEVQAACTPQGKLDYVRNLQRDGAVVAIVGDG 716 Query: 479 VNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRLAQQTRRIALQSVVA 538 +NDA L A DV AMG +GAA A SA V++ DRL +A +AQ+T I Q++V Sbjct: 717 INDAAMLRAGDVSFAMG-KGAALAQVSADAVIMSDRLQAVADCAAMAQRTMHIVRQNLVW 775 Query: 539 GMGLSLLAMVVAALGYLPPVAGAVLQELIDVAVILNALRVLTLEKEEARGQISAADLQ 596 + LA+ AA G L P AV L + V+ NALR L + + R SAA+ Q Sbjct: 776 AATYNFLAIPAAAFGLLDPWMSAVGMSLSSLLVVGNALR---LSRRQVR---SAAEAQ 827 >gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system ATPase [Herbaspirillum seropedicae SmR1] Length = 730 Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 162/553 (29%), Positives = 234/553 (42%), Gaps = 105/553 (18%) Query: 106 QIRPGDRLLVRSGETVPVDGTLL-GAAVVDQSTLSGESLPLSCAQGAFLPSG-------- 156 +R GD +L+ +G+TVP D ++ G A VD+S ++GES P+ G + Sbjct: 155 SLRKGDLVLIEAGDTVPADAEVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLS 214 Query: 157 -------SINAGEAFELLASSTAEQGTLGHIVRLVHSAQQSRAP-----------AARLA 198 S+N GEAF L ++ +V A++ + P + Sbjct: 215 DWIVVRVSVNPGEAF------------LDRMIAMVEGARRQKTPNELALTLLLVALTLVF 262 Query: 199 DRYALWFVPVALGLAALAWLLSGEPERALAVAVVATPCPLILAVPVAL--------VCAM 250 + +P ++ A SG P V+V A L+ +P + V M Sbjct: 263 LLVTVTLLPFSIFSVNAAG--SGSP-----VSVTALIALLVCLIPTTIGGLLSAIGVAGM 315 Query: 251 SRCAQRGVLIKHGGALEKLAHLHTLFLDKTGTLTSGKARLTAIDVAPGMEPHDLLRLA-- 308 SR Q V+ G A+E + L LDKTGT+T G + A APG+ +L +A Sbjct: 316 SRMMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQL 375 Query: 309 ASLEQLSAHAIAQAVVAAALARGLPLALPEQVSEQPGAGLT-----GQVDG-----RQVR 358 ASL + +++V A R L E+ GA +V G R++R Sbjct: 376 ASLADETPE--GRSIVVLAKNR---FNLREREMANLGAEFIPFSAQTRVSGIDLGHRRIR 430 Query: 359 VGTRDFVLGLDALPDW--------AVHPGARIGYEGTAGVYLALDGHLA----------- 399 G D + L D + AR G GT V + A Sbjct: 431 KGAADAIRKLTRAADQRLPAQVESDIESIARRG--GTPLVVIEWHAEAAMINQGAPIRIL 488 Query: 400 GVMQLADQVRLETPRALRLLRTLGAQRIVMLTGDHREVATTIGHALGVDDILSEQTPASK 459 G ++L D V+ LR +G + VM+TGD+R A I GVDD L+E TP K Sbjct: 489 GTVELKDIVKGGIKERFGELRRMGI-KTVMITGDNRLTAAAIAAEAGVDDFLAEATPEQK 547 Query: 460 LEAIRQARQQG-VTMMVGDGVNDAPALAAADVGVAMGARGAAAAAESAQVVLLVDRLDRL 518 L IRQ + +G + M GDG NDAPALA ADV VAM + G AA E+ +V L +L Sbjct: 548 LALIRQHQAEGKLVAMTGDGTNDAPALAQADVAVAMNS-GTQAAKEAGNMVDLDSNPTKL 606 Query: 519 AFAVRLAQQ---TR----RIALQSVVAGMGLSLLAMVVAA---LGYLPPVAGAVLQELID 568 V + +Q TR ++ + VA + AM V + LG L + A I Sbjct: 607 IEIVEIGKQMLMTRGSLTTFSIANDVAKYFAIIPAMFVGSYPQLGALNVMHLASPDSAIM 666 Query: 569 VAVILNALRVLTL 581 AVI NAL ++ L Sbjct: 667 SAVIFNALVIVAL 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,031,494 Number of extensions: 82084 Number of successful extensions: 433 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 415 Number of HSP's successfully gapped: 6 Length of query: 735 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 643 Effective length of database: 1,184,250 Effective search space: 761472750 Effective search space used: 761472750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)