BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0737.p (442 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferas... 817 0.0 gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferas... 158 8e-40 gi|300312816|ref|YP_003776908.1| aminotransferase class III prot... 137 2e-33 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 125 6e-30 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 119 4e-28 >gi|300309354|ref|YP_003773446.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/442 (88%), Positives = 416/442 (94%) Query: 1 MTHADGMLALNAFNPQSGSTNSPATCALIERRRNTFGDGVPLFYRDPVHFVSASGVWLRD 60 MTHADGMLALNAFNPQSGST +PAT ALIERRRNTFGDGVPLFYRDPVHFVSASGVWLRD Sbjct: 1 MTHADGMLALNAFNPQSGSTTAPATRALIERRRNTFGDGVPLFYRDPVHFVSASGVWLRD 60 Query: 61 QEGLDYLDAYNNVPSVGHCHPHVVAAVSKQVATLNTHTRYLSNVVTSYAERLLGTFPRAL 120 Q+GL+YLDAYNNVPSVGHCHP VV AVSKQ ATLNTHTRYLS+VVTSYAERLLGT PR L Sbjct: 61 QDGLEYLDAYNNVPSVGHCHPRVVEAVSKQAATLNTHTRYLSDVVTSYAERLLGTLPREL 120 Query: 121 SKVLFTSSGTESVDLAMRLARLYTGGTGFIVTRFAYHGHSTAVAEITPAFGPGVPVGVNV 180 SKVLFTSSGTESVDLAMRLARLYTGG+GFIVTRFAYHGHSTAVAEITPAFGPGVP+G+NV Sbjct: 121 SKVLFTSSGTESVDLAMRLARLYTGGSGFIVTRFAYHGHSTAVAEITPAFGPGVPIGINV 180 Query: 181 RLVDAPDGYRQDAPVGVKFAQDVATAIADLERHGIKFAGLILDTVCSSDGLFVDPPGFLK 240 RLVDAPDGYRQDAPVG+KFAQDVA AIAD+ERHGI+FAGLILDTVCSSDGLFVDPPGFLK Sbjct: 181 RLVDAPDGYRQDAPVGIKFAQDVAAAIADMERHGIRFAGLILDTVCSSDGLFVDPPGFLK 240 Query: 241 EVVATVKKAGGVFVADEVQPGFGRTGEGMWGFERHGIDPDIVVMGKPMGNGMPIAATVTT 300 + +ATVKKAGGVF+ADEVQPGFGRTGEGMWGFERH I PDIVVMGKPMGNGMPIAATVT Sbjct: 241 DAIATVKKAGGVFIADEVQPGFGRTGEGMWGFERHRIVPDIVVMGKPMGNGMPIAATVTR 300 Query: 301 SDIMQAFTERSGYFNTFGGNTVCCAAASAVLDVIESEGLIDNAKQTGAYLKRGLEQLKVQ 360 +DIMQAFTERSGYFNTFGGNTVCCAAASAVLDVIESEGLI+NAK+TGA LK GLEQLK Q Sbjct: 301 ADIMQAFTERSGYFNTFGGNTVCCAAASAVLDVIESEGLINNAKETGASLKLGLEQLKGQ 360 Query: 361 HQCIGDVRAIGLYAAVEFVQPGTKNGDAVMALNVVNELRKRRVLISTCGPQGNILKIRPP 420 HQCIGDVRAIGLYAAVEFV P TK D MAL+VVN LR++R+LISTCGP GNILKIRPP Sbjct: 361 HQCIGDVRAIGLYAAVEFVLPDTKTADTDMALHVVNTLRQKRILISTCGPAGNILKIRPP 420 Query: 421 LQFSSENCDILVTAIDDTLRIR 442 LQFS ++CD+LVTAIDD L +R Sbjct: 421 LQFSRQHCDLLVTAIDDVLHMR 442 >gi|300310415|ref|YP_003774507.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 426 Score = 158 bits (400), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 194/401 (48%), Gaps = 20/401 (4%) Query: 53 ASGVWLRDQEGLDYLD--AYNNVPSVGHCHPHVVAAVSKQVATLNTHTRYLSNVVTSY-- 108 A+ L D EG ++D A V + GH HP ++ A+ Q+ THT Y SY Sbjct: 33 AANAELWDVEGRRFIDFAAGIAVLNTGHRHPKLLDAMRAQMDKF-THTAYQIVPYASYVE 91 Query: 109 -AERL----LGTFPRALSKVLFTSSGTESVDLAMRLARLYTGGTGFIVTRFAYHGHSTAV 163 AER+ G +P+ K F S+G E+V+ A+++AR +TG G I +HG + Sbjct: 92 LAERINRLTPGNYPK---KTAFFSTGAEAVENAIKIARAHTGRPGVIAFAGGFHGRTMMG 148 Query: 164 AEITPAFGPGVPVGVNVRLVDAPDGYRQDAPVGVKFAQDVATAIADLERHGI---KFAGL 220 +T P +G D A G+ ++D A+ L + I + A + Sbjct: 149 MALTGKVAP-YKLGFGPFPGDVFHAPYPSALHGIT-SEDALEAVKGLFKSDIEAKRVAAI 206 Query: 221 ILDTVCSSDGLFVDPPGFLKEVVATVKKAGGVFVADEVQPGFGRTGEGMWGFERHGIDPD 280 IL+ V G + P F++ + A + G + +ADEVQ G+GRTG+ ++ E + + PD Sbjct: 207 ILEPVQGEGGFYAAPADFMRGLRALCDEHGILLIADEVQSGYGRTGK-LFAMEHYDVLPD 265 Query: 281 IVVMGKPMGNGMPIAATVTTSDIMQAFTERSGYFNTFGGNTVCCAAASAVLDVIESEGLI 340 ++ M K + GMP++A ++IM A G T+ GN + A+A AVLDV+E E L+ Sbjct: 266 LMTMAKSLAGGMPLSAVNGRAEIMDA-PAPGGLGGTYAGNPLAIASALAVLDVMEEEQLV 324 Query: 341 DNAKQTGAYLKRGLEQLKVQHQCIGDVRAIGLYAAVEFVQPGTKNGDAVMALNVVNELRK 400 ++ G L+ L++L+ I +VR +G AVEF P T DA V Sbjct: 325 TRGQRLGDKLQEHLKELRSSVPQIAEVRGVGAMVAVEFADPATGKPDAEYTKKVQQHALN 384 Query: 401 RRVLISTCGPQGNILKIRPPLQFSSENCDILVTAIDDTLRI 441 +L+ TCG GN+++ PL D + + +R+ Sbjct: 385 NGLLLLTCGSYGNVIRFLFPLTIPDTVMDEALGILAKAIRL 425 >gi|300312816|ref|YP_003776908.1| aminotransferase class III protein [Herbaspirillum seropedicae SmR1] Length = 440 Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 130/436 (29%), Positives = 200/436 (45%), Gaps = 42/436 (9%) Query: 42 LFYRDPVH----FVSASGVWLRDQEGLDYLDAYNN--VPSVGHCHPHVVAAVSKQVATLN 95 +F+R+P V+ G+ L DQ+G Y+DA V +GH HP V+ A+ KQV L Sbjct: 4 VFHRNPRSKLPMAVAGEGMELIDQDGKRYIDASGGAAVSCLGHGHPRVIEAIRKQVGELA 63 Query: 96 -THTRYLSNV-VTSYAERLLGTFPRALSKVLFTSSGTESVDLAMRLARLYTGGTG----- 148 HT + + A L P +L+ V F S G+E+V+ A++LAR Y G Sbjct: 64 YAHTSFFTTAPAEELAAMLADAAPGSLNHVYFLSGGSEAVEAALKLARQYYVEVGQPQRR 123 Query: 149 -FIVTRFAYHGHSTAVAEI------TPAFGPGVPVGVNVRLVDAPDGYRQ--DAPVGVKF 199 I R +YHG++ I F +P+ + V YR D V++ Sbjct: 124 HIIARRQSYHGNTLGALAIGGNAWRREMF---MPMLIEAHHVSPCYAYRNRADGESDVQY 180 Query: 200 AQDVATAIAD--LERHGIKFAGLILDTVCSSDGLFVDPPG-FLKEVVATVKKAGGVFVAD 256 Q +A + L + + +TV + V P G + +++ A K G + + D Sbjct: 181 VQRLADELEQKILSLGADQVIAFVAETVVGATAGAVPPVGDYFRKIRAVCDKYGVLLILD 240 Query: 257 EVQPGFGRTGEGMWGFERHGIDPDIVVMGKPMGNG-MPIAATVTTSDIMQAFTERSGYF- 314 EV G GRTG ++ E G+ PDIVV+ K +G G PI A + + I A SG+F Sbjct: 241 EVMSGMGRTGY-LFACEEDGVVPDIVVIAKGLGAGYQPIGAMICSDHIYDAVLRGSGFFQ 299 Query: 315 --NTFGGNTVCCAAASAVLDVIESEGLIDNAKQTGAYLKRGLEQLKVQHQCIGDVRAIGL 372 +T+ G+ CAAA AV I+ E L++N +Q G L+ L Q +GD+R GL Sbjct: 300 HGHTYIGHATACAAAVAVQKTIQEERLLENVRQRGEQLRSELRQAFGDQAHVGDIRGRGL 359 Query: 373 YAAVEFVQPGTK----NGDAVMALNVVNELRKRRVLI-----STCGPQGNILKIRPPLQF 423 + VE V + + D V E KR +L+ + G G+ + + PP Sbjct: 360 FVGVELVAERSSKLPLSPDLRTHARVKAEAMKRGLLVYPMGGTIDGKNGDHILLAPPFIA 419 Query: 424 SSENCDILVTAIDDTL 439 SS + +V + D + Sbjct: 420 SSNDISEIVQRLSDAV 435 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 125 bits (315), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 120/428 (28%), Positives = 184/428 (42%), Gaps = 43/428 (10%) Query: 43 FYRDPVHFVSASGVWLRDQEGLDYLDAYNNVPSV--GHCHPHVVAAVSKQVATLNTHTRY 100 F P VSA G+ RD G LD + V GH HP +V+AV K VATL+ + Sbjct: 25 FKAAPRMLVSAEGMHYRDDAGNTILDGTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPSF 84 Query: 101 LSNVVTSY--AERLLGTFPRALSKVLFTSSGTESVDLAMRLARLYTGGTG------FIVT 152 +++ AERL V +T SG+E+VD A+++A Y G I Sbjct: 85 QLGHPSAFELAERLKAYTGNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIGR 144 Query: 153 RFAYHG----------HSTAVAEITPAFGPGVPVGVNVRLVDAPDGYRQDAPVGVKFAQD 202 YHG + A PGV + ++ + + G A + Sbjct: 145 ERGYHGVGFGGMSVGGIGGNRKTFSTALLPGVDHLPHTHNLEKNAFTKGEPEYGAHLADE 204 Query: 203 VATAIADLERHGIKFAGLILDTVCSSDGLFVDPPGFLKEVVATVKKAGGVFVADEVQPGF 262 + + + I A +I++ V S G+ + P G+LK + K G + + DEV GF Sbjct: 205 LERLVTLHDASNI--AAVIVEPVAGSTGVLIPPKGYLKRLREICTKHGILLIFDEVITGF 262 Query: 263 GRTGEGMWGFERHGIDPDIVVMGKPMGNG-MPIAATVTTSDIMQAFTE-------RSGYF 314 GR G + + ++PDI K + NG +P+ A +I AF GY Sbjct: 263 GRLGT-PFASDYFDVEPDIFTTAKGLTNGVVPMGAVFVKPEIHDAFMNGPDGIELFHGY- 320 Query: 315 NTFGGNTVCCAAASAVLDVIESEGLIDNAKQTGAYLKRGLEQLKVQHQCIGDVRAIGLYA 374 T+ G+ + CAA A L+V ++EG+++NA+ Y + L+ I DVR IGL A Sbjct: 321 -TYSGHPLACAAGLASLEVFQTEGVLENAQAVADYFQEAAHALRGLPHVI-DVRTIGLIA 378 Query: 375 AVEFVQ-PGTKNGDAVMA-LNVVNELRKRRVLISTCGPQGNILKIRPPLQFSSENCDILV 432 +E PG A A + N+ RV G+I+ + PPL + + D L Sbjct: 379 GIELASIPGRVGARAYDAFVRAFNDGILIRV-------TGDIIALSPPLIINKQQIDELF 431 Query: 433 TAIDDTLR 440 + L+ Sbjct: 432 GKLAAILK 439 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/396 (27%), Positives = 172/396 (43%), Gaps = 25/396 (6%) Query: 45 RDPVHFVSASGVWLRDQEGLDYLD--AYNNVPSVGHCHPHVVAAVSKQVATLNTHTRYLS 102 R P+ A GV +D +G ++D A V SVG C+P VV A+ KQ +L S Sbjct: 46 RMPIAMDQAFGVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEAIRKQSESLMHSMEVNS 105 Query: 103 NVVTSYAERLLGTFPRALSK---VLFTSSGTESVDLAMRLARLYTGGTGFIVTRFAYHGH 159 + T A ++ P L FT G+++++ A++ A+ TG I YHG Sbjct: 106 SKRTELAAKISEIMPDGLRGDCITFFTQGGSDALEAAVKFAKRVTGRHQIIAFHGGYHGI 165 Query: 160 STAVAEITP--AFGPGV-PVGVNVRLVDAPDGYRQDAPVGVKFAQDVATAIADLERH--- 213 A +T A+ G P V P YR K A+ +A D + Sbjct: 166 WNASNALTTGTAYRKGFGPFMGGVIHAPYPYAYRFPFDTSHKSAEQIAGEYVDYLLNTPY 225 Query: 214 --GIKFAGLILDTVCSSDGLFVDPPGFLKEVVATVKKAGGVFVADEVQPGFGRTGEGMWG 271 A +I++ V G P FL+ + ++G + + DEVQ G GRTG+ MW Sbjct: 226 TAADDVAAVIVEPVQGEGGYVPPSPEFLQILRKACDRSGALLIVDEVQAGAGRTGK-MWA 284 Query: 272 FERHGIDPDIVVMGKPMGNGMPIAATVTTSDIMQAFTERSGYFNTFGGNTVCCAAASAVL 331 E G+ PD++ GK +G MP+A V SD+ + S NTF N++ A A + Sbjct: 285 VEHSGVKPDMLTFGKGIGGDMPMAGLVMRSDLAAKIPDGS-QPNTFAANSISAAVALTNI 343 Query: 332 DVIESE--GLIDNAKQTGAYLKRGLEQLKVQHQCIGDVRAIGLYAAVEFVQPGTKNGDAV 389 +++ L++ A G + + +G+VR GL +E V+ + Sbjct: 344 SILQDPRLDLVNRAHTLGLEAQERIRSF--NSPWVGEVRGRGLMIGIELVE--NRETREP 399 Query: 390 MALNVVNELRK----RRVLISTCGPQGNILKIRPPL 421 ++ + +L VL+ CG N++++ P L Sbjct: 400 LSREKLGKLMDYVVGHGVLMIPCGRYTNVMRVMPSL 435 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,502,779 Number of extensions: 69015 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 9 Length of query: 442 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 354 Effective length of database: 1,203,190 Effective search space: 425929260 Effective search space used: 425929260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)