BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0724.p
         (919 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310195|ref|YP_003774287.1| inactivated superfamily I helic...  1510   0.0  

>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 924

 Score = 1510 bits (3909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/925 (85%), Positives = 847/925 (91%), Gaps = 7/925 (0%)

Query: 1   MQLATVPIPPTPDFWQQAVRVLLREGQPLGQALQGQGEAALDFSGVQLMVPAFSHAQNFK 60
           M  ATVPIPP+PDFWQQAVR LL  GQPLGQALQ Q  AALDFSGVQLMVPAFSHAQNFK
Sbjct: 1   MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60

Query: 61  AALARQLRRPYIAPRINTLSGLLAMQAPGETAPPSESERLMQLYAQLREHGWLKKMFSAR 120
           AAL+R+LRRPYIAPRINTLSGLLAMQ PGE APPSESERLMQLYAQLREHGWLKKMFSAR
Sbjct: 61  AALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120

Query: 121 RNADLLPLAHTLLALSDELTLALLPEIRASASGQEAAVGRWAQALAQLLEPLAPSAHGML 180
           RNADLLPLAHTLL LSDEL+LALLPEIRASA G++A  GRW QALAQLL PLAPSAH ML
Sbjct: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASA-GEDAIAGRWTQALAQLLAPLAPSAHAML 179

Query: 181 SDEAALVWQVWKTQLDANDRIVQRFDAMLALAEQASLPLVWVSPTEPEPLEAAFLAAYAQ 240
           S+EAALVWQ+WK QLDA DRIVQRFDAML LA +ASLPL+WVSPTEPEPL+AAFLAAYAQ
Sbjct: 180 SEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQ 239

Query: 241 RQPVRIVTLDWSRPAIAPLHPIYLSAWEELARDDEGIAAADAD------NVRTVTTDVTL 294
            QPVRIVTLDWSR A+APL+P+YLSAW EL R++EG A A  +         +      L
Sbjct: 240 HQPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSAL 299

Query: 295 PLLCPADDLEIAAVQSAQIVLRWLGEGKNDIAIVAQDRVTARRLRALLERAEVAVADETG 354
           PLLCPA DLE AAVQSAQIVLRWL +GKN+IAIVAQDRVTARRLRALLERA+V+VADETG
Sbjct: 300 PLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETG 359

Query: 355 WKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPDDHARSERVMRIETRLRRTNI 414
           WKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFP D  R++RVMRIE RLRR NI
Sbjct: 360 WKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANI 419

Query: 415 AGDWQALQSAFAEAGQADELACIIMLAKQAARFTGRKTLAQWCETQRGLCRALGMEAALR 474
           AGDWQALQ+AFA+A   D+L CI+ LA+QAARF GRKTL+QWCETQR LC ALGM+AALR
Sbjct: 420 AGDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALR 479

Query: 475 ADGAGEQCLLMLDDIAAEQGGLSDTFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNG 534
            DGAG+QCLLMLD+IAAEQG L D FSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNG
Sbjct: 480 EDGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNG 539

Query: 535 ARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLTTRAVRQRQQLRDLTELLCVN 594
           ARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNL TRA RQRQQLRDL ELLC+N
Sbjct: 540 ARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCIN 599

Query: 595 PEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLRRVVLPPPVKQLRAQPSSMPAPA 654
           PEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPL+R+ LPPPV+QLRA PSSMPAP+
Sbjct: 600 PEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPS 659

Query: 655 APDLLPASLSASGFGSFLACPYQFFAQRMLRVAVMDELSDTPEKRDYGSWLHEILYRYHA 714
           APDLLP +LSASGFGSFLACPYQFFAQRMLRVAVMDELS+ PEKRDYGSWLHEILY+YHA
Sbjct: 660 APDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHA 719

Query: 715 HLRDQDTPLPARAPLLAQLSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGW 774
           HLRD DTPLPARA LLAQ SEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGW
Sbjct: 720 HLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGW 779

Query: 775 RFAFGEQAQSQALRWEDGGIELYGRLDRVDHNDRGERALLDYKTRTAANLRQKVKEEDDH 834
           +FAFGE++QSQ L+W DGGIELYGRLDRVD N++G+RALLDYKTR+AA+LRQKVKE+DDH
Sbjct: 780 QFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDH 839

Query: 835 QLAFYGLLAGGDVQHAHYVALELGPDKKTGDAAAPDFARKQKMLQQQITTTMQAVAHGAA 894
           QLAFYGLLAGG ++HAHYVALELGPDKKTGDAAAPDFAR+QKMLQQQITTTMQAVAHGAA
Sbjct: 840 QLAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAA 899

Query: 895 LPANGIESVCQYCEMRGLCRKGAWL 919
           LPANGIESVCQYCEMRGLCRKGAWL
Sbjct: 900 LPANGIESVCQYCEMRGLCRKGAWL 924


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,530,507
Number of extensions: 95283
Number of successful extensions: 322
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 1
Length of query: 919
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 825
Effective length of database: 1,174,780
Effective search space: 969193500
Effective search space used: 969193500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)