BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0720.p (574 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-... 914 0.0 gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose tra... 105 1e-23 >gi|300310191|ref|YP_003774283.1| undecaprenyl-phosphate-4-amino-L-arabinose--lipid A 4-amino-L-arabinosyltransferase [Herbaspirillum seropedicae SmR1] Length = 574 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/572 (92%), Positives = 547/572 (95%) Query: 1 MKPVRLPAAATNALPRMALLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGTLADWL 60 MKPVRLPAAATNALPRMALLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHG LADWL Sbjct: 1 MKPVRLPAAATNALPRMALLALALLYILPGLIGRDPWKNEDATSFGIMWTMAHGNLADWL 60 Query: 61 TPNVAGLPLPAESPLAYWFGAICIRLLGWLLGDPLAARVSTIGCFLVGSLSIWYTTYLLG 120 TPNVAGLPLPAESPLAYWFGAICI+L GWLLGDPLAARVSTIGCFLVGSLSIWYTTYLLG Sbjct: 61 TPNVAGLPLPAESPLAYWFGAICIQLFGWLLGDPLAARVSTIGCFLVGSLSIWYTTYLLG 120 Query: 121 RRPEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM 180 RRPEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM Sbjct: 121 RRPEAQPLKLAFGGQPEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAM 180 Query: 181 FGAVRVFDAGKLRHGIWLGLALGMLVLTYGWLLPAGVLIALLVLAALRKDLRALGLLLLL 240 +GA RVFDA ++RH + LGLALGMLVLTYGWLLP GVL+AL++L ALRKD RA L+L L Sbjct: 181 YGAARVFDAHRVRHALGLGLALGMLVLTYGWLLPVGVLLALVLLTALRKDGRAAALVLGL 240 Query: 241 ALPLSLFISAAWILALHQWAPSEAASQFDLWMSWNIYQLNRPTLSTLAFLGKYGVWFAWP 300 ALPL+L I AAW+LALH PSEAA QF+LWMSWN YQLN PTL+TLAFLGKYGVWFAWP Sbjct: 241 ALPLALLICAAWLLALHTLIPSEAAGQFELWMSWNTYQLNVPTLATLAFLGKYGVWFAWP 300 Query: 301 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLVLINVHREEGMLLPLLPALAILAAFG 360 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLVL+N+HREEGMLLPLLPALAILAAFG Sbjct: 301 AWPFAGWALYAWRRQLGSLHIALPLAFLIPITLLVLMNIHREEGMLLPLLPALAILAAFG 360 Query: 361 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPTKIARNAYKLAPGFKPGFEWI 420 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWP +IARNAYKLAPGFKPGF WI Sbjct: 361 LPTMKRGAINAVDWFSVMTLTTSAAFIWIGWIAKETGWPAQIARNAYKLAPGFKPGFAWI 420 Query: 421 SLAIAVAATVAWIVVVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA 480 SLAIA+AAT+AWIVVVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA Sbjct: 421 SLAIAIAATIAWIVVVHWRISRRPSVLWRAVVLSSGGVILCWVLLMTLWLPWVNYGKSYA 480 Query: 481 GVAEQIESKLGSVKQCVQTNVGPAQRASFAYFGNVRFADEHEQGCDYLLLQDDISNQDAS 540 GVAEQIESKLGSVKQCVQTNVGPAQRASFAYFGNVRFADEH Q CDYLLLQDDISNQDA+ Sbjct: 481 GVAEQIESKLGSVKQCVQTNVGPAQRASFAYFGNVRFADEHGQRCDYLLLQDDISNQDAA 540 Query: 541 LMLRQYPGNWRMVWEGRRPSDRDERFRLYRRA 572 LMLRQYPG WRMVWEGRRPSDRDERFRLYRR+ Sbjct: 541 LMLRQYPGAWRMVWEGRRPSDRDERFRLYRRS 572 >gi|300313250|ref|YP_003777342.1| 4-amino-4-deoxy-L-arabinose transferase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 584 Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 157/589 (26%), Positives = 257/589 (43%), Gaps = 77/589 (13%) Query: 19 LLALA-LLYILPGLIGRDPWKNEDATSFGIMWTMAHGTLADWLTPNVAGLPLPAESPLAY 77 LL LA L ++LPG+ G PWK ++ +FG++ M ++L P AG P + PL Y Sbjct: 37 LLVLAGLAWLLPGIFGHGPWKQDETYTFGVIHHML--VSGEYLVPTNAGQPFMEKPPLYY 94 Query: 78 WFGAICIRLLGWLLGDPLAARVSTIGCFLVGSLSIWYTTYLL--GRRPEAQPLKLAFGGQ 135 W + +LL LL AR++++ LV + + L+ RR + P+ Sbjct: 95 WTAMLLAKLLYPLLPYHEGARLASVLYNLVTLVFVARIAQLMWNERRVLSLPVL------ 148 Query: 136 PEPKDFGRTLADGAFLIYLGFLGLLLHSHETSPKTLQIALVAYAMFGAVRVFDAGKLRH- 194 G ++ G G++ H+H+ + A A++G + + + R Sbjct: 149 ------------GTVALFAGSPGMIKHAHDMFTDVALVTGGAMAIYGLLAIALNEERRAP 196 Query: 195 ----GIWLGLALGMLVLTYGWLLPAGVLIALLVLAALRKDLRAL------GLLLLLALPL 244 W GL +G+ +T G +P + + L + R+L G +L++LP Sbjct: 197 SWSAAFWFGLGVGITQMTKGLFVPLTFAATAMAVGVLVRPCRSLSYWKMVGAAVLVSLPF 256 Query: 245 SLFISAAWILALH------QWAPSEAASQFDLWMSWNIYQLNRPTLSTLAFLGKYGVWFA 298 F+ +LA H +W +F +++Y+L T+ G FA Sbjct: 257 --FVVWPALLAQHSVPLFMEWFWDNNVGRF---FGFSVYKLGSDNDHTVILRALIG--FA 309 Query: 299 WPAWPFAGWALYAWR-RQLGSLHIALPLAFLIPITLLVL-INVHREEGMLLPLLPALAIL 356 P A AL RQ GS +ALPLAF I+L VL + + LLP+L LA+L Sbjct: 310 LPGSVLAVLALATGDWRQTGSPRVALPLAF-AAISLAVLQSSATARQLYLLPVLLPLALL 368 Query: 357 AAFGLPTMKRGAINAVDWFSVMTLTTSAAFIWIGWI-----AKETGWPTKIARNAYKLAP 411 A + + DWFS + AA IW ++ A + W I L Sbjct: 369 GARAIARLPNAFHLGWDWFSRIAFGVLAAAIWAIYVVSSLPAADHHW---IDFMGQWLPL 425 Query: 412 GFKPGFEWISLAIAVAATVAWIVVVHWRISR-RPSVLWRAVVLSSGGVILCWVLLMTLWL 470 F + ++LA AV +V W+ W + + R + WR + G+ L W L TL L Sbjct: 426 NFVTPLQPLALAAAVGMSVLWL----WGLGQLRLAGQWRGALSWFAGITLMWGLAFTLLL 481 Query: 471 PWVNYGKSYAGVAEQIESKLGSVKQ---CVQT-NVGPAQRASFAYFGNV---RFADEHEQ 523 PW +YGKSY V ++ ++ + Q C+ + N+G ++ Y+ + ++ Sbjct: 482 PWADYGKSYEFVYTDLKQQIAAQWQDGDCMASENLGESEAPMLYYYTGILHQPIDGVYQT 541 Query: 524 GCDYLLLQDDISNQDASLMLRQYPGNWRMVWEGRRPSDRDERFRLYRRA 572 C ++LL+ + L Q G W++ WEGRR D + ++YRRA Sbjct: 542 QCRWVLLE-----TPGNTPLPQ--GQWKLFWEGRRDGDDGQLLKVYRRA 583 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,630,230 Number of extensions: 60359 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 2 Length of query: 574 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 484 Effective length of database: 1,193,720 Effective search space: 577760480 Effective search space used: 577760480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)