BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0719.p
         (463 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pum...   662   0.0  

>gi|300310190|ref|YP_003774282.1| Na+-driven multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 454

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/448 (85%), Positives = 413/448 (92%)

Query: 8   LSSRHHVGRIARLAWPLLIGQLAIIANGVIDTVMVSRFSALDLGALALGVSIYISVFVGL 67
           +SSRHHVGRIARLAWPLL+GQLA+IANGVIDTVMVSRFSALDL ALALGVSIY+SVFVGL
Sbjct: 1   MSSRHHVGRIARLAWPLLVGQLALIANGVIDTVMVSRFSALDLAALALGVSIYVSVFVGL 60

Query: 68  SGVLQALQPTIGQLFGAGRLDEIGNEVKQGMWLAVLLSIVGSLVLMFAPLLLAFAKASPE 127
           SGVLQALQPTIGQLFGAGR DEIG+EV+QGMWLAV LS++G+LVLMF+PL L+ AKASPE
Sbjct: 61  SGVLQALQPTIGQLFGAGRHDEIGDEVRQGMWLAVFLSVIGALVLMFSPLFLSVAKASPE 120

Query: 128 LVGKATLYLRIEALALPATLLFRVYSSLNTAMARPKMVMALQVGGLALKLPLNALLIFGG 187
           LV KATLYLRIEALALPATL FRVYS+LNTA+ARPKMVMA+QV GL LKLPLNALLIFGG
Sbjct: 121 LVEKATLYLRIEALALPATLFFRVYSALNTAIARPKMVMAIQVCGLLLKLPLNALLIFGG 180

Query: 188 LGLPAFGGPGCAIATTVIAWLMMLAAWLLVARLPLYRPLKLFGTGFVAPSWKIQRNLLLL 247
           LGLPAFGGPGCAIATT+IAWLMMLAAWLLVARLP+YRPLKLFG GFVAPSWK  R LL L
Sbjct: 181 LGLPAFGGPGCAIATTLIAWLMMLAAWLLVARLPVYRPLKLFGRGFVAPSWKTLRRLLWL 240

Query: 248 GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQIAGNVGTVLYMLPLSIASATSTLVAQ 307
           GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQI  NVGTVLYMLPLSIASATSTLVAQ
Sbjct: 241 GIPIGMSYFIEVTAFTLMAVFIARLGAVPVAGHQITANVGTVLYMLPLSIASATSTLVAQ 300

Query: 308 AIGGANMAEARKIGRAGIRLAVSLSAVMGVIVWFMRVHIIHAYTPDPVILGAALPLFLYI 367
           AIGG N A A+KIG AGIRLA++LS ++G++V+ +R  II AYTPDP+I+GAALPLFLYI
Sbjct: 301 AIGGGNFAVAKKIGNAGIRLAIALSVLVGLVVYCLRGQIIRAYTPDPLIIGAALPLFLYI 360

Query: 368 AFYQLFDSMQVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYVLGLDPLGMAPAALHGP 427
           AFYQLFDS+QVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGY+LGLDPLG+ P  L GP
Sbjct: 361 AFYQLFDSLQVTTAFVLRAYKVAVVPTVIYAVTLWGVGLGGGYLLGLDPLGLTPPNLLGP 420

Query: 428 VGFWAANSVSLGLVAVGLLAYLRVIQQR 455
            GFW ANS SLGLV +GLL YLR IQ+R
Sbjct: 421 AGFWLANSASLGLVGIGLLYYLRHIQRR 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,754
Number of extensions: 46634
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 374
Effective length of database: 1,198,455
Effective search space: 448222170
Effective search space used: 448222170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)