BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0715.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310187|ref|YP_003774279.1| anthranilate phosphoribosyltran...   540   e-155

>gi|300310187|ref|YP_003774279.1| anthranilate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 336

 Score =  540 bits (1390), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/310 (86%), Positives = 284/310 (91%)

Query: 26  FAAARFIKEIGRGKDGARSLSREDAQLMYQAMLDGRVSDLELGAILLAMRIKGESVEEIA 85
           F AA FIKEIGRGKDGARSLSR+DA+ MYQAMLDGRVSDLELGAILLAMRIKGESV+EIA
Sbjct: 26  FVAAPFIKEIGRGKDGARSLSRQDARTMYQAMLDGRVSDLELGAILLAMRIKGESVQEIA 85

Query: 86  GFLAAAEASFVPLRAPSGPYAPVVLPSYNGSRKMANLTPLLCMLLVRRGVPVLMHGVTRD 145
           GFL AAEAS   LRAP+GPYAPVVLPSYNGSRKMANLTPLLCMLLVRRGVPVLMHGVT D
Sbjct: 86  GFLDAAEASMPALRAPAGPYAPVVLPSYNGSRKMANLTPLLCMLLVRRGVPVLMHGVTHD 145

Query: 146 PQRVTSAEIFSALDVRHATNASEAEALMAAGQPAFIPIAALAPAIARLLDMRARLGVRNS 205
           PQRVTSAEIF+AL   HA +  +A+ALMAAGQPAF+PI  LAPAIARLL MR  LGVRNS
Sbjct: 146 PQRVTSAEIFTALGQPHAASIEQAQALMAAGQPAFVPITVLAPAIARLLGMRRILGVRNS 205

Query: 206 THTLVKIMQPFAQPALRLTSYTHPEYLEMLTDYFSHSAPHERGDVFLMRGTEGETVANAR 265
           THT+VKIMQPFA PALRLTSYTHPEYLEMLTDYFS++AP ERGD FLMRGTEGETVANAR
Sbjct: 206 THTVVKIMQPFAGPALRLTSYTHPEYLEMLTDYFSNAAPPERGDAFLMRGTEGETVANAR 265

Query: 266 RAQRIDWFSHGQRTVLVEKQSVAEDLPDLPEGRDAATTAQWIREVLEGRRPVPEAIAEQI 325
           RAQRIDWFS G RTVLVEKQSVAE+LPDLPEG+DAA TA WIREVLEG+RPVPEAIAEQ+
Sbjct: 266 RAQRIDWFSGGTRTVLVEKQSVAEELPDLPEGQDAAATAAWIREVLEGQRPVPEAIAEQV 325

Query: 326 EHCVDVAARI 335
           EHCVDVAAR+
Sbjct: 326 EHCVDVAARL 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 913,852
Number of extensions: 35969
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)