BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0710.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...   307   3e-85
gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...    75   3e-15
gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...    64   6e-12

>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  307 bits (787), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/167 (89%), Positives = 155/167 (92%)

Query: 1   MTQADSPLTALFSAVVHTPFGGMGIRSQAGALVEMVYLPRHYAEKEATDAVAAQAVQQIG 60
           MTQADSPLTALFSAVVHTPFGGMG+R++AGALVEMVYLP HYAEK+ATDAVAAQAVQQI 
Sbjct: 12  MTQADSPLTALFSAVVHTPFGGMGVRTEAGALVEMVYLPPHYAEKDATDAVAAQAVQQIT 71

Query: 61  RYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRIQSAPRAVGQACGA 120
            YLADP +RF LP L VGS FQQRVWQAI AIPCGQV TYGQVAKRIQSAPRAVGQACGA
Sbjct: 72  HYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAKRIQSAPRAVGQACGA 131

Query: 121 NWYPLVVPCHRVTAAGGLGGFSHHDDEDGFHLEVKRWLLRHEGVNGY 167
           NWYPLV+PCHRVTAAGGLGGFSHHD EDGFHLEVKRWLLRHEGV GY
Sbjct: 132 NWYPLVIPCHRVTAAGGLGGFSHHDAEDGFHLEVKRWLLRHEGVAGY 178


>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 74.7 bits (182), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 10/119 (8%)

Query: 50  AVAAQAVQQIGRYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRI-- 107
           AV  +   Q+  Y A     F LPL   G+ FQ++VW A+  IP GQ +TY  +A+++  
Sbjct: 49  AVLIETEHQLREYFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGN 108

Query: 108 QSAPRAVGQACGANWYPLVVPCHRVTAAGG-LGGFSHHDDEDGFHLEVKRWLLRHEGVN 165
           + A RAVG A G N   ++ PCHRV  AGG L GF+      G H  VK+ LL  EG++
Sbjct: 109 EKAVRAVGAANGRNPICIIAPCHRVIGAGGELTGFA-----GGLH--VKKLLLAIEGIS 160


>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score = 63.9 bits (154), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 49  DAVAAQAVQQIGRYLADPGFRFRLPLLPVGSVFQQRVWQAIAAIPCGQVQTYGQVAKRI- 107
           DA   + + Q+   L DP     LPL   G+ FQQRVWQA+ +IP G   TY ++A R+ 
Sbjct: 253 DADFERTLAQVLAALEDPRQGAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLG 312

Query: 108 -QSAPRAVGQACGANWYPLVVPCHRVTAAGG 137
             +A RAV  AC  N   +++PCHR+    G
Sbjct: 313 QPAAVRAVANACANNEIAVLIPCHRIVRLDG 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 568,799
Number of extensions: 22320
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)