BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0703.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310175|ref|YP_003774267.1| transmembrane protein [Herbaspi...   514   e-147

>gi|300310175|ref|YP_003774267.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  514 bits (1324), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/296 (91%), Positives = 280/296 (94%)

Query: 1   MEVLNLLLPDFSLIALGVLIYRISNWGDDFWAGMEKLVYFLLFPALLFYSTARLKVDLSV 60
           ME+LNLLLPDFSLIALGVL+YRISNWGD+FWAGMEKLVYFLLFPALLFYSTARLKVDLSV
Sbjct: 1   MEILNLLLPDFSLIALGVLVYRISNWGDEFWAGMEKLVYFLLFPALLFYSTARLKVDLSV 60

Query: 61  TGGMVQTGVGALIVGIALTWLGKPLLRATPMTYASGMQCAYRFNSYIALALATRMAGEEG 120
           TGG+VQTG+ AL+ GIALTWLGKP LR+TPMTY SGMQCAYRFNSYIALALATRMAGEEG
Sbjct: 61  TGGLVQTGLLALLAGIALTWLGKPFLRSTPMTYESGMQCAYRFNSYIALALATRMAGEEG 120

Query: 121 AGLMAILLGFGVPLCNIAAVHALAPKNGNLLRELAKNPLLVATAGGLTFSALGLHLPEVA 180
           AGLMAILLGFGVPLCNIAAVHALAPKN NLLRELAKNPLLVATAGGLTFSALGLHLPEVA
Sbjct: 121 AGLMAILLGFGVPLCNIAAVHALAPKNSNLLRELAKNPLLVATAGGLTFSALGLHLPEVA 180

Query: 181 SVVLSRLGAASIALGLLMVGAGLRLSGLKESKLVVGWFILIKLVAVPLVAYAIGNWLHLP 240
            VVLSRLGAASIALGLLMVGAGLRLSGLKESK VVGWF+ IKL AVP VA+ IG  L LP
Sbjct: 181 GVVLSRLGAASIALGLLMVGAGLRLSGLKESKPVVGWFVFIKLFAVPAVAWLIGQHLQLP 240

Query: 241 PLQLRIVVLFCSLPTASSAYILAARMGGNGPFTAFLISFGTLLSALTIPVWLTLVH 296
           PLQLRIVVLFCSLPTASSAYILAARMGGNGPFTAFLISFGTLLSALTIP WL LVH
Sbjct: 241 PLQLRIVVLFCSLPTASSAYILAARMGGNGPFTAFLISFGTLLSALTIPFWLALVH 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 998,028
Number of extensions: 44930
Number of successful extensions: 260
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)