BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0699.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protei...   418   e-118
gi|300312735|ref|YP_003776827.1| DedA transmembrane protein [Her...   194   5e-51
gi|300310491|ref|YP_003774583.1| transmembrane protein [Herbaspi...    57   1e-09

>gi|300310171|ref|YP_003774263.1| DedA DSG-1 transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/220 (94%), Positives = 213/220 (96%)

Query: 9   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 68
           MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF
Sbjct: 1   MDYLQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTF 60

Query: 69  CAMGAMDIWLLMSLLVAAAVAGNTLNYWIGGWVGHRVYTHNYRWLNPEAIRKTHAFYEKH 128
           CA GAMDIWLLM+LLV AAVAGNTLNYWIGGWVG RVYTHNYRWLNPEA+RKTHAFYEKH
Sbjct: 61  CATGAMDIWLLMTLLVVAAVAGNTLNYWIGGWVGQRVYTHNYRWLNPEALRKTHAFYEKH 120

Query: 129 GGKTIVIARFTPIVRTFAPFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 188
           GGKTIVIARFTPIVRTFAPFIAGVSAMSF RFQLFNVLGAFLWVVGLVVLGYLFGNIPVV
Sbjct: 121 GGKTIVIARFTPIVRTFAPFIAGVSAMSFARFQLFNVLGAFLWVVGLVVLGYLFGNIPVV 180

Query: 189 QQNLNTLVLVGLIGAVIPIVLGVLWQLWRKLRGKRKVSNA 228
           QQNLNTLVL+G++ AV PIVLG LWQ+WRKLRGKRKVSNA
Sbjct: 181 QQNLNTLVLIGIVAAVFPIVLGGLWQIWRKLRGKRKVSNA 220


>gi|300312735|ref|YP_003776827.1| DedA transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  194 bits (493), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 145/210 (69%), Gaps = 4/210 (1%)

Query: 12  LQLLDVLVHVDKYLGVLIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAM 71
           L L+D +VH+D++L  L   YG  ++ +LFLI+FCETGLVV P LPGDSLLF+ G   A 
Sbjct: 5   LFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGALAAT 64

Query: 72  GAMDIWLLMSLLVAAAVAGNTLNYWIGGWVGHRVYTH-NYRWLNPEAIRKTHAFYEKHGG 130
           GA DI L++  L+ AA+ G++ NY IG  +G +V+   N R    E + KTHAF+EKHGG
Sbjct: 65  GAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFEKHGG 124

Query: 131 KTIVIARFTPIVRTFAPFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQ 190
           K I+IARF PIVRTFAPF+AGV AM++ RF L+NV+G   WV      GY FGN+P+V++
Sbjct: 125 KAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMPIVKK 184

Query: 191 NLNTLVLVGLIGAVIPIVLGVLWQLWRKLR 220
           NL+ L++  +I +++P   G++  +  K R
Sbjct: 185 NLSLLIVAIVILSILP---GIIEYIRHKRR 211


>gi|300310491|ref|YP_003774583.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 13/206 (6%)

Query: 28  LIEQYGALIYAVLFLIVFCETGLVVLPFLPGDSLLFIAGTFCAMGAMDIWLLMSLLVAAA 87
           LIEQYG LI   +F+ V  E     +P  P    L + G   A G     +L+ + V AA
Sbjct: 7   LIEQYGLLI---VFVNVLVEQLGAPVPAYP---TLILTGALSAAGRYSPAVLLLVAVCAA 60

Query: 88  VAGNTLNYWIGGWVGHRVYTHNYR-WLNPEA-IRKTHAFYEKHGGKTIVIARFTPIVRTF 145
           +  + + Y  G   G ++ +   R  L+P++ +R+T + Y + G +++++A+F P   + 
Sbjct: 61  LLADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120

Query: 146 APFIAGVSAMSFGRFQLFNVLGAFLWVVGLVVLGYLFGNIPVVQQNLNTLVLVGLIGA-V 204
           A  ++G        F L++  G+ LW    + LG LF +   V   LN L  +G  G  +
Sbjct: 121 ASALSGTMGTRRRSFLLWDAAGSALWAGLGIFLGSLFSS--AVDDLLNVLAELGHYGMLM 178

Query: 205 IPIVLG--VLWQLWRKLRGKRKVSNA 228
           I + L   V  + W++ R ++ +  A
Sbjct: 179 IAVALAAFVANKWWQRRRFRKSLEMA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.147    0.473 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,912
Number of extensions: 21962
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 3
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)